MeanDiffusivityEstimator
========================

.. code-block:: none

  
  USAGE: 
  
     MeanDiffusivityEstimator  [--returnparameterfile <std::string>]
                               [--processinformationaddress <std::string>]
                               [--xml] [--echo] [--debug] [-p] [--nt <int>]
                               [--mask <std::string>] [--ra <int>] [--sh
                               <int>] [--] [--version] [-h] <std::string>
                               <std::string>
  
  
  Where: 
  
     --returnparameterfile <std::string>
       Filename in which to write simple return parameters (int, float,
       int-vector, etc.) as opposed to bulk return parameters (image,
       geometry, transform, measurement, table).
  
     --processinformationaddress <std::string>
       Address of a structure to store process information (progress, abort,
       etc.). (value: 0)
  
     --xml
       Produce xml description of command line arguments (value: 0)
  
     --echo
       Echo the command line arguments (value: 0)
  
     --debug
       debug (value: 0)
  
     -p,  --progress
       show progress of processing (value: 0)
  
     --nt <int>
       Number of threads. If it not positive, then the default number for
       multiple threads is used. (value: -1)
  
     --mask <std::string>
       Mask file.
  
     --ra <int>
       Rank for radial basis. (value: 1)
  
     --sh <int>
       Rank for SH basis. (value: 4)
  
     --,  --ignore_rest
       Ignores the rest of the labeled arguments following this flag.
  
     --version
       Displays version information and exits.
  
     -h,  --help
       Displays usage information and exits.
  
     <std::string>
       (required)  Text file that contains b values, gradient orientations,
       and DWI images.
  
     <std::string>
       (required)  Output Image File where each voxel is a scalar MD value.
  
  
     Description: Estimate Mean Diffusivity in each voxel. 
  
     Examples: 
  
     MeanDiffusivityEstimator dwi.txt D_sh4_ra1.nii.gz --sh 4 --ra 1 
  
     Reference: 
  
     Jian Cheng, Aurobrata Ghosh, Rachid Deriche, Tianzi Jiang, 'Model-Free,
     Regularized, Fast, and Robust Analytical Orientation Distribution
     Function Estimation', Medical Image Computing and Computer-Assisted
     Intervention (MICCAI'10), vol. 6361, pp. 648–656, sep, 2010.  
  
     Jian Cheng, Aurobrata Ghosh, Tianzi Jiang, Rachid Deriche, 'Model-free
     and Analytical EAP Reconstruction via Spherical Polar Fourier Diffusion
     MRI', Medical Image Computing and Computer-Assisted Intervention
     (MICCAI'10), vol. 6361, pp. 590–597, sep, 2010.
  
     Author(s): Jian Cheng (jian.cheng.1983@gmail.com)
  
     Acknowledgements: Thank you everyone.