mexGetSamplesFromSPFCoefficients ================================ .. code-block:: none % mexGetSamplesFromSPFCoefficients: get DWI or EAP samples (orignal samples or the SH coefficients) from given SPF coefficients % % Usage: % [samples] = mexGetSamplesFromSPFCoefficients(spfCoef4D, radius, params) % [samples] = mexGetSamplesFromSPFCoefficients(spfCoef4D, radiusVec, grad, params) % % Inputs: % dwi4DNoramlized: 4D DWI data, normalized by b0 image; % grad : orientation matrix where each row is an orientation (x,y,z), caresian format. % If it is not given, then return SH coefficients instead of orignal samples. % radiusVector: b values in a vector, or r values. If it is set, the number of rows should be the same as grad % radius: b value or r value. % % params.MD0 : Typical mean diffusivity (MD) value. The default value is 0.7e-3. % params.tau : Tau value. The default is calculated based on 4*pi*pi*tau=1. % param.scale : Scale value for the SPF basis in radial part, the default value is set by tau and MD0 and tau % params.sh : SH order % params.ra : order in radial part % params.fourier : Use Fourier transform. % params.inqspace : If it is true, the basis is in q-space (default). If it is false, the basis is in r-space. % params.mdImage : Mean diffusivity Image for adaptive scale. % params.basisType : SPF: use SPF basis (default). % params.mask : Mask file. 2D or 3D matrix. % % params.thread : Number of thread. Default is -1, which means it is automatically determined. % params.verbose : Verbose level. 0: no output log. 1: normal log. 2: large log for debug. % % Outputs: % isoDWI: each column is a dwi sample % % % Reference: % 1. "Model-Free, Regularized, Fast, and Robust Analytical Orientation Distribution Function Estimation", % Jian Cheng, Aurobrata Ghosh, Rachid Deriche, Tianzi Jiang, Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), vol. 6361, pp. 648–656, sep, 2010. % 2. "Model-free and Analytical EAP Reconstruction via Spherical Polar Fourier Diffusion MRI", % Jian Cheng, Aurobrata Ghosh, Tianzi Jiang, Rachid Deriche, Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), vol. 6361, pp. 590–597, sep, 2010. % % Copyright (c) 2013, Jian Cheng %