mexSphericalPolarFourierImaging =============================== .. code-block:: none % mexSphericalPolarFourierImaging: estimate continuous DWI signal and EAP represented by coefficients of given basis. % % Usage: % [signal] = mexSphericalPolarFourierImaging(dwi4DNoramlized, grad, bVec, params) % % Inputs: % dwi4DNoramlized: 4D DWI data, normalized by b0 image; % grad : orientation matrix where each row is an orientation (x,y,z), caresian format % bVector: b values in a vector, each row is a b value % % params.MD0 : Typical mean diffusivity (MD) value. The default value is 0.7e-3. % params.tau : Tau value. The default is calculated based on 4*pi*pi*tau=1. % param.scale : Scale value for the SPF basis in radial part, the default value is set by tau and MD0 and tau % params.sh: SH order % params.ra: order in radial part % params.lambdaSH : lambda in spherical part % params.lambdaRA : lambda in radial part % params.lambdaL1 : lambda for L1 solver % params.odfOrder : odf order % params.radius : Radius for EAP profile. % params.mdImage : Mean diffusivity Image for adaptive scale. % params.estimation : (LS, L1_2, L1_DL) LS: least square. % L1_2 means Laplace-Beltrami weight (two regularization parameters lambdaSH and lambdaRA); % L1_DL only use lambdaL1, because the learned dictionary corresponses the regularization matrix. % params.solver : (FISTA_LS, SPAMS) % FISTA_LS: FISTA using least square initialization. % SPAMS (default): use spams' weighted lasso solver. % params.maxIter : Maximal number of iteration in L1 FISTA. % params.minChange : Minimal change percentage of the cost function and variable for l1 oprimization. % params.mask : Mask file. 2D or 3D matrix. % % params.thread : Number of thread. Default is -1, which means it is automatically determined. % params.verbose : Verbose level. 0: no output log. 1: normal log. 2: large log for debug. % % Outputs: % signal: coefficient under a given basis, 4D image % % % Reference: % 1. "Model-Free, Regularized, Fast, and Robust Analytical Orientation Distribution Function Estimation", % Jian Cheng, Aurobrata Ghosh, Rachid Deriche, Tianzi Jiang, Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), vol. 6361, pp. 648–656, sep, 2010. % 2. "Model-free and Analytical EAP Reconstruction via Spherical Polar Fourier Diffusion MRI", % Jian Cheng, Aurobrata Ghosh, Tianzi Jiang, Rachid Deriche, Medical Image Computing and Computer-Assisted Intervention (MICCAI'10), vol. 6361, pp. 590–597, sep, 2010. % % Copyright (c) 2013, Jian Cheng %