DWIPreprocess
=============

.. code-block:: none

  
  USAGE: 
  
     DWIPreprocess  [--returnparameterfile <std::string>]
                    [--processinformationaddress <std::string>] [--xml]
                    [--echo] [--debug] [--warn] [--bThreshold <double>]
                    [--oEachShell] [--noNormalize] [--isVectorImage] [--mask
                    <std::string>] [--odwi <std::string>] [--ob0Image
                    <std::string>] [--ograd <std::string>] [--ob
                    <std::string>] [--] [--version] [-h] <std::string>
                    <std::string>
  
  
  Where: 
  
     --returnparameterfile <std::string>
       Filename in which to write simple return parameters (int, float,
       int-vector, etc.) as opposed to bulk return parameters (image,
       geometry, transform, measurement, table).
  
     --processinformationaddress <std::string>
       Address of a structure to store process information (progress, abort,
       etc.). (value: 0)
  
     --xml
       Produce xml description of command line arguments (value: 0)
  
     --echo
       Echo the command line arguments (value: 0)
  
     --debug
       debug (value: 0)
  
     --warn
       If it is set, show waning information when reading zero values in DWI
       data (value: 0)
  
     --bThreshold <double>
       If it is set, b values whose distance is smallter the threshold will
       be considered in the same shell. (value: 15)
  
     --oEachShell
       If set, output DWI in each shell (value: 0)
  
     --noNormalize
       If set, do not normalize DWI based on b0 image (value: 0)
  
     --isVectorImage
       If it is set, the DWI images are VectorImage (value: 0)
  
     --mask <std::string>
       Mask file.
  
     --odwi <std::string>
       Comma separated list of iterations must have the same number of
       elements as learning rate
  
     --ob0Image <std::string>
       Output b0 Image file
  
     --ograd <std::string>
       Output grad file
  
     --ob <std::string>
       Output b file
  
     --,  --ignore_rest
       Ignores the rest of the labeled arguments following this flag.
  
     --version
       Displays version information and exits.
  
     -h,  --help
       Displays usage information and exits.
  
     <std::string>
       (required)  Text file that contains b values, gradient orientations,
       and DWI images
  
     <std::string>
       (required)  Text file that contains b values, gradient orientations,
       and DWI images
  
  
     Description: Read DWI images, gradients, b values, and output the formal
     normalized formalt in a configuration file.
  
     Examples: 
  
     DWIPreprocess data.txt  data_normalize.txt --oEachShell --bThreshold 15
     --mask mask.nii.gz  --odwi dwi_normalize.nii.gz  --ograd
     grad_normalize.txt --ob0Image dwi_b0.nii.gz
  
     Author(s): Jian Cheng (jian.cheng.1983@gmail.com)
  
     Acknowledgements: Thank you everyone.