MeshFromPeaks
=============

.. code-block:: none

  
  USAGE: 
  
     MeshFromPeaks  [--returnparameterfile <std::string>]
                    [--processinformationaddress <std::string>] [--xml]
                    [--echo] [--debug] [-p] [--st] [--nolighting]
                    [--nonormal] [--zoom <double>] [--png <std::string>]
                    [--bg <std::vector<double>>] [--angle
                    <std::vector<double>>] [--size <std::vector<int>>]
                    [--scale <double>] [--slice <std::vector<int>>] [--box
                    <std::vector<int>>] [--flip <std::vector<int>>] [--color
                    <std::vector<int>>] [--maxnumber <int>] [--radius
                    <double>] [--colorscheme <DIRECTION|FIXED>] [--type <XYZV
                    |XYZ|NXYZV|NXYZ>] [-o <std::string>] [--] [--version]
                    [-h] <std::string>
  
  
  Where: 
  
     --returnparameterfile <std::string>
       Filename in which to write simple return parameters (int, float,
       int-vector, etc.) as opposed to bulk return parameters (image,
       geometry, transform, measurement, table).
  
     --processinformationaddress <std::string>
       Address of a structure to store process information (progress, abort,
       etc.). (value: 0)
  
     --xml
       Produce xml description of command line arguments (value: 0)
  
     --echo
       Echo the command line arguments (value: 0)
  
     --debug
       debug (value: 0)
  
     -p,  --progress
       show progress of processing (value: 0)
  
     --st
       Use single thread. (value: 0)
  
     --nolighting
       Set LightingOff. (value: 0)
  
     --nonormal
       Do not use vtkPolyDataNormals. (value: 0)
  
     --zoom <double>
       zoom factor. Used when visualzing the vtk file.
  
     --png <std::string>
       output png file. Used when visualzing the vtk file.
  
     --bg <std::vector<double>>
       background color for the window (value: 0,0,0)
  
     --angle <std::vector<double>>
       azimuth,elevation. Used when visualzing the vtk file. (value: 0.0,0.0)
  
     --size <std::vector<int>>
       window size. Used when visualzing the vtk file. (value: 600,600)
  
     --scale <double>
       Scale factor: length of the peaks. (value: 1)
  
     --slice <std::vector<int>>
       coordinates for coronal, sagittal and transverse views. When -1 is
       used for x/y/z, then the voxel is visible in the x/y/z-axis. (value:
       -1,-1,-1)
  
     --box <std::vector<int>>
       only generate mesh from a given box (x0,x1,y0,y1,z0,z1). When -1 is
       used, then x0/y0/z0 will be 0, x1/y1/z1 will be the maximal number in
       the x/y/z-axis. (value: -1,-1,-1,-1,-1,-1)
  
     --flip <std::vector<int>>
       Flip x/y/z-axis for spherical functions. 1 means flip, 0 means
       no-flip. (value: 0,0,0)
  
     --color <std::vector<int>>
       Use fixed color for peaks when --colorscheme FIXED is set. (value: 255
       ,255,0)
  
     --maxnumber <int>
       If it is positive, the given maximum number of peaks are used for
       visualization (first several peaks). Otherwise, visualize all peaks.
       (value: -1)
  
     --radius <double>
       Tube radius. If it is negative or zero, use lines instead of tubes.
       (value: 0.02)
  
     --colorscheme <DIRECTION|FIXED>
       Color scheme. DIRECTION: r,g,b determined by direction. FIXED: fixed
       color in --color. (value: FIXED)
  
     --type <XYZV|XYZ|NXYZV|NXYZ>
       Peak Type. XYZV: peak direction vector (x,y,z) + peak magnitude v;
       XYZ: peak direction vector; NXYZV: number of peaks + peak direction
       vectors + peak magnitudes; NXYZ: number of peaks + peak direction
       vectors. (value: XYZV)
  
     -o <std::string>,  --output <std::string>
       Output vtk file. If it is not set, visualize the vtk file. (value: "")
  
     --,  --ignore_rest
       Ignores the rest of the labeled arguments following this flag.
  
     --version
       Displays version information and exits.
  
     -h,  --help
       Displays usage information and exits.
  
     <std::string>
       (required)  Input file.
  
  
     Description: Create a mesh from peaks for visualization.
  
     Examples: 
  
     MeshFromPeaks eap_r0.015_peaks.nii.gz -o eap_r0.015_peaks_vis.vtk
     --scale 1.0  --color 255,255,0 --radius 0.05 
  
     MeshFromPeaks eap_r0.015_peaks.nii.gz --scale 1.0  --color 255,255,0
     --radius 0.05 
  
     MeshFromPeaks eap_r0.015_peaks.nii.gz -o eap_r0.015_peaks_vis.vtk
     --scale 1.0  --color 255,255,0 --radius -1.0 
  
     
  
     Author(s): Jian Cheng (jian.cheng.1983@gmail.com)
  
     Acknowledgements: Thank you everyone.