ComputeSHCoefficientsOfDWIFromSymmetricTensorΒΆ

USAGE:

   ComputeSHCoefficientsOfDWIFromSymmetricTensor  [--returnparameterfile
                                        <std::string>]
                                        [--processinformationaddress
                                        <std::string>] [--xml] [--echo]
                                        [--nob] [--allsh] [--sh <int>]
                                        [--bvalues <std::vector<double>>]
                                        [--famd <std::vector<double>>]
                                        [--eigenvalues
                                        <std::vector<double>>] [--output
                                        <std::string>] [--] [--version]
                                        [-h]


Where:

   --returnparameterfile <std::string>
     Filename in which to write simple return parameters (int, float,
     int-vector, etc.) as opposed to bulk return parameters (image,
     geometry, transform, measurement, table).

   --processinformationaddress <std::string>
     Address of a structure to store process information (progress, abort,
     etc.). (default: 0)

   --xml
     Produce xml description of command line arguments (default: 0)

   --echo
     Echo the command line arguments (default: 0)

   --nob
     If it is set, only print SH coefficients without b values. (default:
     0)

   --allsh
     If it is set, output all coefficients including zeros for c_{l,m},
     m!=0. If not set, output only c_{l,0} (default: 0)

   --sh <int>
     SH order. (default: 8)

   --bvalues <std::vector<double>>
     B value.

   --famd <std::vector<double>>
     FA and Mean Diffusivity (MD) for symmetric tensor.

   --eigenvalues <std::vector<double>>
     Two eigenvalues for symmetric tensor.

   --output <std::string>
     Output SH coefficients into the file. If not set, output to screen.

   --,  --ignore_rest
     Ignores the rest of the labeled arguments following this flag.

   --version
     Displays version information and exits.

   -h,  --help
     Displays usage information and exits.


   Description: Compute SH coefficients of DWI signal in DTI with symmetric
   tensor (along z-axis).

   Examples:

   ComputeSHCoefficientsOfDWIFromSymmetricTensor --sh 4 --bvalues 1000
   --famd 0.9,0.7e-3

   ComputeSHCoefficientsOfDWIFromSymmetricTensor --sh 4 --bvalues 1000
   --famd 0.9,0.7e-3 --nob

   ComputeSHCoefficientsOfDWIFromSymmetricTensor --sh 4 --bvalues 1000
   --eigenvalues 1.7e-3,0.3e-3

   Author(s): Jian Cheng (jian.cheng.1983@gmail.com)

   Acknowledgements: Thank you everyone.