utlDMRI.h File Reference

#include "utlCore.h"
#include "utlNDArray.h"
#include "utlSTDHeaders.h"

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Namespaces
	utl

Enumerations
enum	{   TENSOR_9D =0,   TENSOR_UPPER_TRIANGULAR,   TENSOR_LOWER_TRIANGULAR,   TENSOR_DIAGONAL_FIRST,   TENSOR_EMBED6D }
enum	{   TRACTS_UNKNOWN =0,   TRACTS_TRK =1,   TRACTS_TCK =2,   TRACTS_VTK =3 }
enum	{   DWI_NORMALIZE =0,   DWI_NONORMALIZE }
enum	{   CARTESIAN_TO_CARTESIAN =0,   CARTESIAN_TO_SPHERICAL =1,   SPHERICAL_TO_CARTESIAN =2,   SPHERICAL_TO_SPHERICAL =3 }
enum	{   RADIAN_TO_DEGREE =0,   RADIAN_TO_RADIAN =1,   DEGREE_TO_RADIAN =2,   DEGREE_TO_DEGREE =3 }
enum	{   DIRECTION_NODUPLICATE =0,   DIRECTION_DUPLICATE =1 }
enum	{   DIRECTION_NOFLIP =0,   DIRECTION_FLIP =1 }

Functions
template<class T >
void	utl::Convert1To2Tensor (const utl::NDArray< T, 1 > &vec, utl::NDArray< T, 2 > &mat)
template<class T >
void	utl::Convert2To1Tensor (const utl::NDArray< T, 2 > &mat, utl::NDArray< T, 1 > &vec)
template<typename V1Type , typename V2Type >
void	utl::ConvertTensor6DTo6D (const V1Type &v6d1, V2Type &v6d2, int s1, int s2)
template<typename V1Type , typename V2Type >
void	utl::ConvertTensor6DTo9D (const V1Type &v6d, V2Type &v9d, int v6dStoreWay)
template<typename V1Type , typename V2Type >
void	utl::ConvertTensor9DTo6D (const V1Type &v9d, V2Type &v6d, int v6dStoreWay)
int	utl::DimToRankSH (const int dimm)
template<class T >
utl::Matrix< T >	utl::GetDTIDesignMatrix (const utl::Matrix< T > &gradMat, const std::vector< T > &bVec, int dwi_normalize)
template<typename T >
std::vector< T >	utl::GetE1E2FromFAMD (const T fa, const T meanEigenValue, const bool isE2E3Equal=true)
int	utl::GetFiberTractsFormat (const std::string &filename)
int	utl::GetFiberTractsFormatFromFileExtension (const std::string &filename)
int	utl::GetIndexSHj (const int l, const int m)
std::vector< int >	utl::GetIndexSHlm (const int j)
template<class T >
std::vector< T >	utl::GetScalarsByName (const std::vector< T > &vec, const std::vector< std::string > &nameVec, const std::string &name)
int	utl::GetScalarsDimentionByName (const std::string &name)
template<class T >
void	utl::MatchBVectorAndGradientMatrix (const T &br, std::vector< T > &vec, const NDArray< T, 2 > &grad)
template<class T >
void	utl::MatchBVectorAndGradientMatrix (std::vector< T > &vec, NDArray< T, 2 > &grad)
template<class T >
void	utl::NormalizeGrad (const utl::NDArray< T, 2 > &grad)
int	utl::RankToDimSH (const int shRank)
template<class T >
std::shared_ptr< NDArray< T, 2 > >	utl::ReadGrad (const std::string &grad_str, const int NoSymmetricDuple=DIRECTION_NODUPLICATE, const int mode=CARTESIAN_TO_SPHERICAL, const int flipx=DIRECTION_NOFLIP, const int flipy=DIRECTION_NOFLIP, const int flipz=DIRECTION_NOFLIP, const bool need_normalize=true)
template<class T >
void	utl::RemoveScalarsByName (std::vector< T > &vec, const std::vector< std::string > &nameVec, const std::string &name)
void	utl::RGBToIndex (double R, double G, double B, double &index)
template<class T >
void	utl::SetScalarsByName (const std::vector< T > &vec, const std::vector< std::string > &nameVec, const std::vector< T > &scalars, const std::string &name)

Detailed Description

Author

Jian Cheng (JC), jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om

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Definition in file utlDMRI.h.