#include <itkFiber.h>

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Detailed Description

template<typename TValue = double>
class itk::Fiber< TValue >

Definition at line 27 of file itkFiber.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Fiber	Self

typedef std::shared_ptr< STD2DVectorType >	STD2DVectorPointer

typedef std::vector< std::vector< ValueType > >	STD2DVectorType

typedef std::shared_ptr< STDVectorType >	STDVectorPointer

typedef std::vector< ValueType >	STDVectorType

typedef DataObject	Superclass

typedef TractType::Pointer	TractPointer

typedef SlowPolyLineParametricPath< 3 >	TractType

typedef TValue	ValueType

typedef TractType::VertexType	VertexType

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

Fiber< TValue >::Pointer	DeepClone () const

double	DistanceToPoint (double x, double y, double z) const

int	GetDimensionOfProperties () const

int	GetDimensionOfScalarsPerPoint () const

Vector< double, 3 >	GetDirection (const double pos, bool isDerivativeNormalizedByDistance=false) const

virtual const char *	GetNameOfClass () const

int	GetNumberOfPoints () const

VertexType	GetPoint (const int index) const

std::vector< double >	GetPointDistanceStats () const

	itkSetGetMacro (Properties, STDVectorPointer)

	itkSetGetMacro (Scalars, STD2DVectorPointer)

	itkSetGetMacro (Tract, TractPointer)

void	RemovePropertiesByName (const std::string &name, const std::vector< std::string > &nameVec)

void	RemoveScalarsByName (const std::string &name, const std::vector< std::string > &nameVec)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	Fiber ()

LightObject::Pointer	InternalClone () const ITK_OVERRIDE

virtual void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE

	~Fiber ()

Protected Attributes
STDVectorPointer	m_Properties

STD2DVectorPointer	m_Scalars

TractPointer	m_Tract = TractType::New()

Private Member Functions
	Fiber (const Self &) ITK_DELETE_FUNCTION

void	operator= (const Self &) ITK_DELETE_FUNCTION

Member Typedef Documentation

template<typename TValue = double>

typedef SmartPointer< const Self > itk::Fiber< TValue >::ConstPointer

Definition at line 34 of file itkFiber.h.

template<typename TValue = double>

typedef SmartPointer< Self > itk::Fiber< TValue >::Pointer

Definition at line 33 of file itkFiber.h.

template<typename TValue = double>

typedef Fiber itk::Fiber< TValue >::Self

Standard class typedefs.

Definition at line 31 of file itkFiber.h.

template<typename TValue = double>

typedef std::shared_ptr<STD2DVectorType> itk::Fiber< TValue >::STD2DVectorPointer

Definition at line 49 of file itkFiber.h.

template<typename TValue = double>

typedef std::vector<std::vector<ValueType> > itk::Fiber< TValue >::STD2DVectorType

Definition at line 48 of file itkFiber.h.

template<typename TValue = double>

typedef std::shared_ptr<STDVectorType> itk::Fiber< TValue >::STDVectorPointer

Definition at line 47 of file itkFiber.h.

template<typename TValue = double>

typedef std::vector<ValueType> itk::Fiber< TValue >::STDVectorType

Definition at line 46 of file itkFiber.h.

template<typename TValue = double>

typedef DataObject itk::Fiber< TValue >::Superclass

Definition at line 32 of file itkFiber.h.

template<typename TValue = double>

typedef TractType::Pointer itk::Fiber< TValue >::TractPointer

Definition at line 43 of file itkFiber.h.

template<typename TValue = double>

typedef SlowPolyLineParametricPath< 3 > itk::Fiber< TValue >::TractType

Definition at line 42 of file itkFiber.h.

template<typename TValue = double>

typedef TValue itk::Fiber< TValue >::ValueType

Definition at line 38 of file itkFiber.h.

template<typename TValue = double>

typedef TractType::VertexType itk::Fiber< TValue >::VertexType

Definition at line 44 of file itkFiber.h.

Constructor & Destructor Documentation

template<typename TValue = double>

itk::Fiber< TValue >::Fiber ( )

inlineprotected

Definition at line 103 of file itkFiber.h.

template<typename TValue = double>

itk::Fiber< TValue >::~Fiber ( )

inlineprotected

Definition at line 105 of file itkFiber.h.

References itk::Fiber< TValue >::InternalClone(), ITK_OVERRIDE, and itk::Fiber< TValue >::PrintSelf().

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template<typename TValue = double>

itk::Fiber< TValue >::Fiber ( const Self & )

private

Member Function Documentation

template<typename TValue = double>

virtual::itk::LightObject::Pointer itk::Fiber< TValue >::CreateAnother ( void ) const

template<class TValue >

Fiber< TValue >::Pointer itk::Fiber< TValue >::DeepClone ( ) const

Definition at line 43 of file itkFiber.hxx.

References itk::Fiber< TValue >::DistanceToPoint().

Referenced by itk::Fiber< TValue >::GetDirection(), and itk::Fiber< TValue >::InternalClone().

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template<class TValue >

double itk::Fiber< TValue >::DistanceToPoint	(	double	x,
		double	y,
		double	z
	)		const

Definition at line 65 of file itkFiber.hxx.

References itk::Fiber< TValue >::GetPointDistanceStats(), and utl::max().

Referenced by itk::Fiber< TValue >::DeepClone(), and itk::Fiber< TValue >::GetDirection().

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template<typename TValue = double>

int itk::Fiber< TValue >::GetDimensionOfProperties ( ) const

inline

Definition at line 56 of file itkFiber.h.

References itk::Fiber< TValue >::m_Properties.

template<typename TValue = double>

int itk::Fiber< TValue >::GetDimensionOfScalarsPerPoint ( ) const

inline

Definition at line 61 of file itkFiber.h.

References itk::Fiber< TValue >::m_Scalars.

template<typename TValue = double>

Vector<double,3> itk::Fiber< TValue >::GetDirection	(	const double	pos,
		bool	isDerivativeNormalizedByDistance = `false`
	)		const

inline

Definition at line 74 of file itkFiber.h.

References itk::Fiber< TValue >::DeepClone(), itk::Fiber< TValue >::DistanceToPoint(), itk::Fiber< TValue >::GetNumberOfPoints(), itk::Fiber< TValue >::GetPointDistanceStats(), itk::Fiber< TValue >::itkSetGetMacro(), and itk::Fiber< TValue >::m_Tract.

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template<typename TValue = double>

virtual const char* itk::Fiber< TValue >::GetNameOfClass ( ) const

virtual

template<typename TValue = double>

int itk::Fiber< TValue >::GetNumberOfPoints ( ) const

inline

Definition at line 51 of file itkFiber.h.

References itk::Fiber< TValue >::m_Tract.

Referenced by itk::Fiber< TValue >::GetDirection().

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template<typename TValue = double>

VertexType itk::Fiber< TValue >::GetPoint ( const int index ) const

inline

Definition at line 66 of file itkFiber.h.

References itk::Fiber< TValue >::m_Tract, itk::Fiber< TValue >::RemovePropertiesByName(), and itk::Fiber< TValue >::RemoveScalarsByName().

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template<class TValue >

std::vector< double > itk::Fiber< TValue >::GetPointDistanceStats ( ) const

Definition at line 86 of file itkFiber.hxx.

References utl::GetContainerStats(), and itk::Fiber< TValue >::RemoveScalarsByName().

Referenced by itk::Fiber< TValue >::DistanceToPoint(), and itk::Fiber< TValue >::GetDirection().

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template<class TValue >

LightObject::Pointer itk::Fiber< TValue >::InternalClone ( ) const

protected

Definition at line 24 of file itkFiber.hxx.

References itk::Fiber< TValue >::DeepClone().

Referenced by itk::Fiber< TValue >::~Fiber().

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template<typename TValue = double>

itk::Fiber< TValue >::itkSetGetMacro	(	Properties	,
		STDVectorPointer
	)

Referenced by itk::Fiber< TValue >::GetDirection().

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template<typename TValue = double>

itk::Fiber< TValue >::itkSetGetMacro	(	Scalars	,
		STD2DVectorPointer
	)

template<typename TValue = double>

itk::Fiber< TValue >::itkSetGetMacro	(	Tract	,
		TractPointer
	)

template<typename TValue = double>

static Pointer itk::Fiber< TValue >::New ( )

static

Referenced by itk::FiberTractsReader::ReadTractsTRK().

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template<typename TValue = double>

void itk::Fiber< TValue >::operator= ( const Self & )

private

template<class TValue >

void itk::Fiber< TValue >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Definition at line 122 of file itkFiber.hxx.

References itk::GetDimensionOfProperties(), PrintVar, and utl::PrintVector().

Referenced by itk::Fiber< TValue >::RemovePropertiesByName(), and itk::Fiber< TValue >::~Fiber().

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template<class TValue >

void itk::Fiber< TValue >::RemovePropertiesByName	(	const std::string &	name,
		const std::vector< std::string > &	nameVec
	)

Definition at line 114 of file itkFiber.hxx.

References itk::Fiber< TValue >::PrintSelf(), and utl::RemoveScalarsByName().

Referenced by itk::Fiber< TValue >::GetPoint(), and itk::Fiber< TValue >::RemoveScalarsByName().

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template<class TValue >

void itk::Fiber< TValue >::RemoveScalarsByName	(	const std::string &	name,
		const std::vector< std::string > &	nameVec
	)

Definition at line 102 of file itkFiber.hxx.

References itk::Fiber< TValue >::RemovePropertiesByName(), and utl::RemoveScalarsByName().

Referenced by itk::Fiber< TValue >::GetPoint(), and itk::Fiber< TValue >::GetPointDistanceStats().

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Member Data Documentation

template<typename TValue = double>

STDVectorPointer itk::Fiber< TValue >::m_Properties

protected

properties for a single tract

Definition at line 114 of file itkFiber.h.

Referenced by itk::Fiber< TValue >::GetDimensionOfProperties().

template<typename TValue = double>

STD2DVectorPointer itk::Fiber< TValue >::m_Scalars

protected

various scalars for points along a single tract

Definition at line 117 of file itkFiber.h.

Referenced by itk::Fiber< TValue >::GetDimensionOfScalarsPerPoint().

template<typename TValue = double>

TractPointer itk::Fiber< TValue >::m_Tract = TractType::New()

protected

Definition at line 111 of file itkFiber.h.

Referenced by itk::Fiber< TValue >::GetDirection(), itk::Fiber< TValue >::GetNumberOfPoints(), and itk::Fiber< TValue >::GetPoint().

The documentation for this class was generated from the following files:

Modules/Tractography/include/itkFiber.h
Modules/Tractography/include/itkFiber.hxx

Detailed Description

template<typename TValue = double> class itk::Fiber< TValue >

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<typename TValue = double>
class itk::Fiber< TValue >