itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType > Class Template Reference

#include <itkSamplingSchemeQSpaceIMOCEstimationFilter.h>

Inheritance diagram for itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >:

Collaboration diagram for itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >:

Detailed Description

template<class TSamplingType>
class itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >

Estimation of single/multi-shell orientations using Iterative Maximum Overlap Construction (IMOC)

Author

Jian Cheng (JC), jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om

Definition at line 38 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::Index2DVectorPointer	Index2DVectorPointer
typedef Superclass::Index2DVectorType	Index2DVectorType
typedef Superclass::IndexVectorType	IndexVectorType
typedef Superclass::MatrixPointer	MatrixPointer
typedef Superclass::MatrixType	MatrixType
typedef itk::Point< double, 3 >	MeasurementVectorType
typedef SmartPointer< Self >	Pointer
typedef itk::Statistics::ListSample< MeasurementVectorType >	SampleType
typedef SamplingType::Pointer	SamplingPointer
typedef TSamplingType	SamplingType
typedef SamplingSchemeQSpaceIMOCEstimationFilter	Self
typedef Superclass::STDVectorPointer	STDVectorPointer
typedef Superclass::STDVectorType	STDVectorType
typedef SamplingSchemeQSpaceEstimationFilter< TSamplingType >	Superclass
typedef itk::Statistics::KdTreeGenerator< SampleType >	TreeGeneratorType
typedef TreeGeneratorType::KdTreeType	TreeType
typedef Superclass::ValueType	ValueType
Public Types inherited from itk::SamplingSchemeQSpaceEstimationFilter< TSamplingType >
typedef SmartPointer< const Self >	ConstPointer
enum	CriteriaType {   DISTANCE =0,   ELECTROSTATIC }
typedef SamplingType::Index2DVectorPointer	Index2DVectorPointer
typedef SamplingType::Index2DVectorType	Index2DVectorType
typedef SamplingType::IndexVectorType	IndexVectorType
typedef SamplingType::MatrixPointer	MatrixPointer
typedef SamplingType::MatrixType	MatrixType
typedef SmartPointer< Self >	Pointer
typedef SamplingType::ConstPointer	SamplingConstPointer
typedef SamplingType::Pointer	SamplingPointer
typedef TSamplingType	SamplingType
typedef SamplingSchemeQSpaceEstimationFilter	Self
typedef SamplingType::STDVectorPointer	STDVectorPointer
typedef SamplingType::STDVectorType	STDVectorType
typedef LightProcessObject	Superclass
typedef SamplingType::ValueType	ValueType

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
void	GenerateData () ITK_OVERRIDE
virtual const char *	GetNameOfClass () const
	itkSetGetMacro (TessellationOrder, unsigned int)
	itkSetGetMacro (FineOrientations, MatrixPointer)
	itkSetGetMacro (AngleMinChange, double)
	itkSetGetMacro (ChooseMinimalCoverageShell, bool)
Public Member Functions inherited from itk::SamplingSchemeQSpaceEstimationFilter< TSamplingType >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual CriteriaType	GetCriteriaType ()
virtual double	GetElectrostaticOrder ()
virtual IndexVectorType	GetNumbersInShell ()
virtual const SamplingType *	GetOutputOrientations () const
virtual double	GetWeightForSingleShell ()
bool	IsSetInitialization () const
	itkGetObjectMacro (InitialOrientations, SamplingType)
	itkGetObjectMacro (OutputOrientations, SamplingType)
	itkSetNDebugMacro (NumbersInShell, IndexVectorType)
virtual void	SetCriteriaType (CriteriaType _arg)
virtual void	SetElectrostaticOrder (double _arg)
virtual void	SetInitialOrientations (SamplingType *_arg)
virtual void	SetWeightForSingleShell (double _arg)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::SamplingSchemeQSpaceEstimationFilter< TSamplingType >
static Pointer	New ()

Protected Member Functions
void	Initialization () ITK_OVERRIDE
bool	IsSatisfiedSeparationAngles (const std::vector< double > &angles)
	SamplingSchemeQSpaceIMOCEstimationFilter ()
	~SamplingSchemeQSpaceIMOCEstimationFilter ()
Protected Member Functions inherited from itk::SamplingSchemeQSpaceEstimationFilter< TSamplingType >
	SamplingSchemeQSpaceEstimationFilter ()
	~SamplingSchemeQSpaceEstimationFilter ()

Protected Attributes
double	m_AngleMinChange =0.0001
bool	m_ChooseMinimalCoverageShell =true
MatrixPointer	m_FineOrientations
SamplingPointer	m_FineScheme = SamplingType::New()
TreeType::Pointer	m_KDTree = nullptr
double	m_MinDistanceInFineScheme =-1
SampleType::Pointer	m_Sample
unsigned int	m_TessellationOrder =7
TreeGeneratorType::Pointer	m_TreeGenerator =nullptr
Protected Attributes inherited from itk::SamplingSchemeQSpaceEstimationFilter< TSamplingType >
CriteriaType	m_CriteriaType
double	m_ElectrostaticOrder
SamplingPointer	m_InitialOrientations
IndexVectorType	m_NumbersInShell
SamplingPointer	m_OutputOrientations
double	m_WeightForSingleShell

Private Member Functions
void	operator= (const Self &)
	SamplingSchemeQSpaceIMOCEstimationFilter (const Self &)

Member Typedef Documentation

template<class TSamplingType >

typedef SmartPointer< const Self > itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::ConstPointer

Definition at line 47 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef Superclass::Index2DVectorPointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::Index2DVectorPointer

Definition at line 59 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef Superclass::Index2DVectorType itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::Index2DVectorType

Definition at line 58 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef Superclass::IndexVectorType itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::IndexVectorType

Definition at line 57 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef Superclass::MatrixPointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::MatrixPointer

Definition at line 54 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef Superclass::MatrixType itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::MatrixType

Definition at line 53 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef itk::Point<double,3> itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::MeasurementVectorType

Definition at line 61 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef SmartPointer< Self > itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::Pointer

Definition at line 46 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef itk::Statistics::ListSample< MeasurementVectorType > itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::SampleType

Definition at line 62 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef SamplingType::Pointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::SamplingPointer

Definition at line 50 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef TSamplingType itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::SamplingType

Definition at line 49 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef SamplingSchemeQSpaceIMOCEstimationFilter itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::Self

Standard class typedefs.

Definition at line 44 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef Superclass::STDVectorPointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::STDVectorPointer

Definition at line 56 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef Superclass::STDVectorType itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::STDVectorType

Definition at line 55 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef SamplingSchemeQSpaceEstimationFilter<TSamplingType> itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::Superclass

Definition at line 45 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef itk::Statistics::KdTreeGenerator< SampleType > itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::TreeGeneratorType

Definition at line 63 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef TreeGeneratorType::KdTreeType itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::TreeType

Definition at line 64 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

typedef Superclass::ValueType itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::ValueType

Definition at line 52 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

Constructor & Destructor Documentation

template<class TSamplingType >

itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::SamplingSchemeQSpaceIMOCEstimationFilter ( )

protected

Definition at line 31 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.hxx.

References itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::Initialization().

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template<class TSamplingType >

itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::~SamplingSchemeQSpaceIMOCEstimationFilter ( )

inlineprotected

Definition at line 82 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

References ITK_OVERRIDE.

template<class TSamplingType >

itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::SamplingSchemeQSpaceIMOCEstimationFilter ( const Self &  )

private

Member Function Documentation

template<class TSamplingType >

virtual::itk::LightObject::Pointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::CreateAnother

(

void

)

const

template<class TSamplingType >

void itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::GenerateData ( void  )

virtual

Reimplemented from itk::SamplingSchemeQSpaceEstimationFilter< TSamplingType >.

Definition at line 554 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.hxx.

References utlGlobalException.

Referenced by itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::IsSatisfiedSeparationAngles().

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template<class TSamplingType >

virtual const char* itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::GetNameOfClass ( ) const

virtual

Standard Macros

Reimplemented from itk::SamplingSchemeQSpaceEstimationFilter< TSamplingType >.

template<class TSamplingType >

void itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::Initialization ( )

protectedvirtual

Reimplemented from itk::SamplingSchemeQSpaceEstimationFilter< TSamplingType >.

Definition at line 40 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.hxx.

References CARTESIAN_TO_CARTESIAN, DIRECTION_NODUPLICATE, and itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::IsSatisfiedSeparationAngles().

Referenced by itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::SamplingSchemeQSpaceIMOCEstimationFilter().

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template<class TSamplingType >

bool itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::IsSatisfiedSeparationAngles ( const std::vector< double > &  angles )

protected

Definition at line 80 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.hxx.

References utl::argmin(), itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::GenerateData(), and utlException.

Referenced by itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::Initialization().

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template<class TSamplingType >

itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::itkSetGetMacro	(	TessellationOrder	,
		unsigned	int
	)

template<class TSamplingType >

itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::itkSetGetMacro	(	FineOrientations	,
		MatrixPointer
	)

template<class TSamplingType >

itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::itkSetGetMacro	(	AngleMinChange	,
		double
	)

template<class TSamplingType >

itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::itkSetGetMacro	(	ChooseMinimalCoverageShell	,
		bool
	)

template<class TSamplingType >

static Pointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::New ( )

static

template<class TSamplingType >

void itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::operator= ( const Self &  )

private

Member Data Documentation

template<class TSamplingType >

double itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::m_AngleMinChange =0.0001

protected

Definition at line 101 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

bool itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::m_ChooseMinimalCoverageShell =true

protected

If true, always choose the shell with the minimal total coverage in each step. It is used only for multi-shell case where the number of samples are different in shells. It is better to always set it as true.

Definition at line 108 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

MatrixPointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::m_FineOrientations

protected

It is generated from m_TessellationOrder

Definition at line 92 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

SamplingPointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::m_FineScheme = SamplingType::New()

protected

Definition at line 93 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

TreeType::Pointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::m_KDTree = nullptr

protected

Definition at line 98 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

double itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::m_MinDistanceInFineScheme =-1

protected

Definition at line 95 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

SampleType::Pointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::m_Sample

protected

Definition at line 99 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

unsigned int itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::m_TessellationOrder =7

protected

the order of tessellation for the orignal fine mesh

Definition at line 89 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

template<class TSamplingType >

TreeGeneratorType::Pointer itk::SamplingSchemeQSpaceIMOCEstimationFilter< TSamplingType >::m_TreeGenerator =nullptr

protected

Definition at line 97 of file itkSamplingSchemeQSpaceIMOCEstimationFilter.h.

---

The documentation for this class was generated from the following files:

• Modules/SamplingScheme/include/itkSamplingSchemeQSpaceIMOCEstimationFilter.h
• Modules/SamplingScheme/include/itkSamplingSchemeQSpaceIMOCEstimationFilter.hxx