#include <itkCylinderModelGenerator.h>

Inheritance diagram for itk::CylinderModelGenerator< PreciseType >:

Collaboration diagram for itk::CylinderModelGenerator< PreciseType >:

Detailed Description

template<class PreciseType = double>
class itk::CylinderModelGenerator< PreciseType >

Cylinder Model.

Reference: Resolution of complex tissue microarchitecture using the diffusion orientation transform (DOT), Evren Ozarslan, NeuroImage 2006

Author: Jian Cheng (JC), jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om

Definition at line 42 of file itkCylinderModelGenerator.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef Image3DType::Pointer	Image3DPointer

typedef Image< double >	Image3DType

typedef LUTExpType::Pointer	LUTExpPointer

typedef UnaryFunctorLookUpTable< utl::Functor::Exp< double > >	LUTExpType

typedef Superclass::MatrixPointer	MatrixPointer

typedef Superclass::MatrixType	MatrixType

typedef SmartPointer< Self >	Pointer

typedef Superclass::PointType	PointType

typedef Superclass::SamplingSchemeQSpacePointer	SamplingSchemeQSpacePointer

typedef Superclass::SamplingSchemeQSpaceType	SamplingSchemeQSpaceType

typedef Superclass::SamplingSchemeRSpacePointer	SamplingSchemeRSpacePointer

typedef Superclass::SamplingSchemeRSpaceType	SamplingSchemeRSpaceType

typedef CylinderModelGenerator	Self

typedef Superclass::STDVectorPointer	STDVectorPointer

typedef Superclass::STDVectorType	STDVectorType

typedef DiffusionModelGenerator< PreciseType >	Superclass

typedef Superclass::VectorPointer	VectorPointer

typedef Superclass::VectorType	VectorType

Public Types inherited from itk::DiffusionModelGenerator< PreciseType >
typedef SmartPointer< const Self >	ConstPointer

typedef utl_shared_ptr< MatrixType >	MatrixPointer

typedef vnl_matrix< double >	MatrixType

typedef SmartPointer< Self >	Pointer

typedef SamplingSchemeQSpaceType::PointType	PointType

typedef SamplingSchemeQSpaceType::Pointer	SamplingSchemeQSpacePointer

typedef SamplingSchemeQSpace< double >	SamplingSchemeQSpaceType

typedef SamplingSchemeRSpaceType::Pointer	SamplingSchemeRSpacePointer

typedef SamplingScheme3D< double >	SamplingSchemeRSpaceType

typedef DiffusionModelGenerator	Self

typedef utl_shared_ptr< STDVectorType >	STDVectorPointer

typedef std::vector< double >	STDVectorType

typedef Object	Superclass

typedef utl_shared_ptr< VectorType >	VectorPointer

typedef vnl_vector< double >	VectorType

Public Member Functions
void	BuildTable ()

void	ComputeDWISamples ()

void	ComputeEAPSamples ()

void	ComputeODFSamples ()

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual PointType	GetCylinderAxis ()

virtual double	GetD0 ()

virtual double	GetLength ()

virtual const char *	GetNameOfClass () const

virtual double	GetRadius ()

void	Rotate (const MatrixType &mat)

virtual void	SetCylinderAxis (PointType _arg)

virtual void	SetD0 (double _arg)

virtual void	SetLength (double _arg)

virtual void	SetRadius (double _arg)

Public Member Functions inherited from itk::DiffusionModelGenerator< PreciseType >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual VectorPointer	GetDWISamples ()

virtual VectorPointer	GetEAPSamples ()

virtual int	GetODFOrder ()

virtual VectorPointer	GetODFSamples ()

	itkGetObjectMacro (SamplingSchemeQSpace, SamplingSchemeQSpaceType)

	itkGetObjectMacro (SamplingSchemeRSpace, SamplingSchemeRSpaceType)

virtual void	SetODFOrder (int _arg)

virtual void	SetSamplingSchemeQSpace (SamplingSchemeQSpaceType *_arg)

virtual void	SetSamplingSchemeRSpace (SamplingSchemeRSpaceType *_arg)

virtual void	VerifyInputParameters () const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::DiffusionModelGenerator< PreciseType >
static Pointer	New ()

Protected Member Functions
	CylinderModelGenerator ()

LightObject::Pointer	InternalClone () const

void	PrintSelf (std::ostream &os, Indent indent) const

virtual	~CylinderModelGenerator ()

Protected Member Functions inherited from itk::DiffusionModelGenerator< PreciseType >
	DiffusionModelGenerator ()

LightObject::Pointer	InternalClone () const

void	PrintSelf (std::ostream &os, Indent indent) const

virtual	~DiffusionModelGenerator ()

Protected Attributes
PointType	m_CylinderAxis

double	m_D0

Image3DPointer	m_EAPVolumeForZAxis

double	m_Length

LUTExpPointer	m_LUTExp

Image3DPointer	m_ODFVolumeForZAxis

double	m_Radius

Protected Attributes inherited from itk::DiffusionModelGenerator< PreciseType >
VectorPointer	m_DWISamples

VectorPointer	m_EAPSamples

int	m_ODFOrder

VectorPointer	m_ODFSamples

SamplingSchemeQSpacePointer	m_SamplingSchemeQSpace

SamplingSchemeRSpacePointer	m_SamplingSchemeRSpace

Private Member Functions
	CylinderModelGenerator (const Self &)

void	operator= (const Self &)

Member Typedef Documentation

template<class PreciseType = double>

typedef SmartPointer<const Self> itk::CylinderModelGenerator< PreciseType >::ConstPointer

Definition at line 49 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Image3DType::Pointer itk::CylinderModelGenerator< PreciseType >::Image3DPointer

Definition at line 71 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Image<double> itk::CylinderModelGenerator< PreciseType >::Image3DType

Definition at line 70 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef LUTExpType::Pointer itk::CylinderModelGenerator< PreciseType >::LUTExpPointer

Definition at line 74 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef UnaryFunctorLookUpTable<utl::Functor::Exp<double> > itk::CylinderModelGenerator< PreciseType >::LUTExpType

Definition at line 73 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::MatrixPointer itk::CylinderModelGenerator< PreciseType >::MatrixPointer

Definition at line 59 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::MatrixType itk::CylinderModelGenerator< PreciseType >::MatrixType

Definition at line 55 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef SmartPointer<Self> itk::CylinderModelGenerator< PreciseType >::Pointer

Definition at line 48 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::PointType itk::CylinderModelGenerator< PreciseType >::PointType

Definition at line 68 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::SamplingSchemeQSpacePointer itk::CylinderModelGenerator< PreciseType >::SamplingSchemeQSpacePointer

Definition at line 65 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::SamplingSchemeQSpaceType itk::CylinderModelGenerator< PreciseType >::SamplingSchemeQSpaceType

Definition at line 64 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::SamplingSchemeRSpacePointer itk::CylinderModelGenerator< PreciseType >::SamplingSchemeRSpacePointer

Definition at line 67 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::SamplingSchemeRSpaceType itk::CylinderModelGenerator< PreciseType >::SamplingSchemeRSpaceType

Definition at line 66 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef CylinderModelGenerator itk::CylinderModelGenerator< PreciseType >::Self

Standard class typedefs.

Definition at line 46 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::STDVectorPointer itk::CylinderModelGenerator< PreciseType >::STDVectorPointer

Definition at line 62 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::STDVectorType itk::CylinderModelGenerator< PreciseType >::STDVectorType

Definition at line 61 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef DiffusionModelGenerator<PreciseType> itk::CylinderModelGenerator< PreciseType >::Superclass

Definition at line 47 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::VectorPointer itk::CylinderModelGenerator< PreciseType >::VectorPointer

Definition at line 60 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

typedef Superclass::VectorType itk::CylinderModelGenerator< PreciseType >::VectorType

Definition at line 58 of file itkCylinderModelGenerator.h.

Constructor & Destructor Documentation

template<class PreciseType >

itk::CylinderModelGenerator< PreciseType >::CylinderModelGenerator ( )

protected

CylinderModelGenerator constructor

Definition at line 29 of file itkCylinderModelGenerator.hxx.

References itk::CylinderModelGenerator< PreciseType >::InternalClone(), and itk::UnaryFunctorLookUpTable< TFunctor >::New().

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template<class PreciseType = double>

virtual itk::CylinderModelGenerator< PreciseType >::~CylinderModelGenerator ( )

inlineprotectedvirtual

Definition at line 104 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

itk::CylinderModelGenerator< PreciseType >::CylinderModelGenerator ( const Self & )

private

Member Function Documentation

template<class PreciseType >

void itk::CylinderModelGenerator< PreciseType >::BuildTable ( )

Definition at line 73 of file itkCylinderModelGenerator.hxx.

References itk::CylinderModelGenerator< PreciseType >::PrintSelf().

Referenced by itk::CylinderModelGenerator< PreciseType >::InternalClone().

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template<class PreciseType >

void itk::CylinderModelGenerator< PreciseType >::ComputeDWISamples ( )

virtual

Reimplemented from itk::DiffusionModelGenerator< PreciseType >.

Definition at line 109 of file itkCylinderModelGenerator.hxx.

References utl::BesselJPrimeZerosTable, itk::CylinderModelGenerator< PreciseType >::ComputeEAPSamples(), M_PI, utlGlobalException, and utlShowPosition.

Referenced by itk::CylinderModelGenerator< PreciseType >::Rotate().

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template<class PreciseType >

void itk::CylinderModelGenerator< PreciseType >::ComputeEAPSamples ( )

virtual

Reimplemented from itk::DiffusionModelGenerator< PreciseType >.

Definition at line 215 of file itkCylinderModelGenerator.hxx.

References itk::CylinderModelGenerator< PreciseType >::ComputeODFSamples(), and utlGlobalException.

Referenced by itk::CylinderModelGenerator< PreciseType >::ComputeDWISamples().

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template<class PreciseType >

void itk::CylinderModelGenerator< PreciseType >::ComputeODFSamples ( )

virtual

Reimplemented from itk::DiffusionModelGenerator< PreciseType >.

Definition at line 225 of file itkCylinderModelGenerator.hxx.

References utlGlobalException.

Referenced by itk::CylinderModelGenerator< PreciseType >::ComputeEAPSamples().

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template<class PreciseType = double>

virtual::itk::LightObject::Pointer itk::CylinderModelGenerator< PreciseType >::CreateAnother ( void ) const

template<class PreciseType = double>

virtual PointType itk::CylinderModelGenerator< PreciseType >::GetCylinderAxis ( )

virtual

template<class PreciseType = double>

virtual double itk::CylinderModelGenerator< PreciseType >::GetD0 ( )

virtual

template<class PreciseType = double>

virtual double itk::CylinderModelGenerator< PreciseType >::GetLength ( )

virtual

template<class PreciseType = double>

virtual const char* itk::CylinderModelGenerator< PreciseType >::GetNameOfClass ( ) const

virtual

Standard part of every itk Object.

Reimplemented from itk::DiffusionModelGenerator< PreciseType >.

template<class PreciseType = double>

virtual double itk::CylinderModelGenerator< PreciseType >::GetRadius ( )

virtual

template<class PreciseType >

LightObject::Pointer itk::CylinderModelGenerator< PreciseType >::InternalClone ( ) const

protected

Definition at line 51 of file itkCylinderModelGenerator.hxx.

References itk::CylinderModelGenerator< PreciseType >::BuildTable().

Referenced by itk::CylinderModelGenerator< PreciseType >::CylinderModelGenerator().

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template<class PreciseType = double>

static Pointer itk::CylinderModelGenerator< PreciseType >::New ( )

static

Method for creation through the object factory.

template<class PreciseType = double>

void itk::CylinderModelGenerator< PreciseType >::operator= ( const Self & )

private

template<class PreciseType >

void itk::CylinderModelGenerator< PreciseType >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protected

Definition at line 81 of file itkCylinderModelGenerator.hxx.

References PrintVar3, and itk::CylinderModelGenerator< PreciseType >::Rotate().

Referenced by itk::CylinderModelGenerator< PreciseType >::BuildTable().

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template<class PreciseType >

void itk::CylinderModelGenerator< PreciseType >::Rotate ( const MatrixType & mat )

virtual

Reimplemented from itk::DiffusionModelGenerator< PreciseType >.

Definition at line 98 of file itkCylinderModelGenerator.hxx.

References itk::CylinderModelGenerator< PreciseType >::ComputeDWISamples().

Referenced by itk::CylinderModelGenerator< PreciseType >::PrintSelf().

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template<class PreciseType = double>

virtual void itk::CylinderModelGenerator< PreciseType >::SetCylinderAxis ( PointType _arg )

virtual

template<class PreciseType = double>

virtual void itk::CylinderModelGenerator< PreciseType >::SetD0 ( double _arg )

virtual

template<class PreciseType = double>

virtual void itk::CylinderModelGenerator< PreciseType >::SetLength ( double _arg )

virtual

template<class PreciseType = double>

virtual void itk::CylinderModelGenerator< PreciseType >::SetRadius ( double _arg )

virtual

Member Data Documentation

template<class PreciseType = double>

PointType itk::CylinderModelGenerator< PreciseType >::m_CylinderAxis

protected

Definition at line 116 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

double itk::CylinderModelGenerator< PreciseType >::m_D0

protected

Definition at line 114 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

Image3DPointer itk::CylinderModelGenerator< PreciseType >::m_EAPVolumeForZAxis

protected

Definition at line 120 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

double itk::CylinderModelGenerator< PreciseType >::m_Length

protected

Definition at line 112 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

LUTExpPointer itk::CylinderModelGenerator< PreciseType >::m_LUTExp

protected

Definition at line 118 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

Image3DPointer itk::CylinderModelGenerator< PreciseType >::m_ODFVolumeForZAxis

protected

Definition at line 121 of file itkCylinderModelGenerator.h.

template<class PreciseType = double>

double itk::CylinderModelGenerator< PreciseType >::m_Radius

protected

Definition at line 113 of file itkCylinderModelGenerator.h.

The documentation for this class was generated from the following files:

Modules/DiffusionModels/include/itkCylinderModelGenerator.h
Modules/DiffusionModels/include/itkCylinderModelGenerator.hxx

Detailed Description

template<class PreciseType = double> class itk::CylinderModelGenerator< PreciseType >

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<class PreciseType = double>
class itk::CylinderModelGenerator< PreciseType >