itk::DiffusionModelGenerator< PreciseType > Class Template Reference

#include <itkDiffusionModelGenerator.h>

Inheritance diagram for itk::DiffusionModelGenerator< PreciseType >:

Collaboration diagram for itk::DiffusionModelGenerator< PreciseType >:

Detailed Description

template<class PreciseType = double>
class itk::DiffusionModelGenerator< PreciseType >

generate ground truth DWI/EAP/ODF ets from a given model

Author

Jian Cheng (JC), jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om

Definition at line 35 of file itkDiffusionModelGenerator.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef utl_shared_ptr< MatrixType >	MatrixPointer
typedef vnl_matrix< double >	MatrixType
typedef SmartPointer< Self >	Pointer
typedef SamplingSchemeQSpaceType::PointType	PointType
typedef SamplingSchemeQSpaceType::Pointer	SamplingSchemeQSpacePointer
typedef SamplingSchemeQSpace< double >	SamplingSchemeQSpaceType
typedef SamplingSchemeRSpaceType::Pointer	SamplingSchemeRSpacePointer
typedef SamplingScheme3D< double >	SamplingSchemeRSpaceType
typedef DiffusionModelGenerator	Self
typedef utl_shared_ptr< STDVectorType >	STDVectorPointer
typedef std::vector< double >	STDVectorType
typedef Object	Superclass
typedef utl_shared_ptr< VectorType >	VectorPointer
typedef vnl_vector< double >	VectorType

Public Member Functions
virtual void	ComputeDWISamples ()
virtual void	ComputeEAPSamples ()
virtual void	ComputeODFSamples ()
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual VectorPointer	GetDWISamples ()
virtual VectorPointer	GetEAPSamples ()
virtual const char *	GetNameOfClass () const
virtual int	GetODFOrder ()
virtual VectorPointer	GetODFSamples ()
	itkGetObjectMacro (SamplingSchemeQSpace, SamplingSchemeQSpaceType)
	itkGetObjectMacro (SamplingSchemeRSpace, SamplingSchemeRSpaceType)
virtual void	Rotate (const MatrixType &mat)
virtual void	SetODFOrder (int _arg)
virtual void	SetSamplingSchemeQSpace (SamplingSchemeQSpaceType *_arg)
virtual void	SetSamplingSchemeRSpace (SamplingSchemeRSpaceType *_arg)
virtual void	VerifyInputParameters () const

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	DiffusionModelGenerator ()
LightObject::Pointer	InternalClone () const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual	~DiffusionModelGenerator ()

Protected Attributes
VectorPointer	m_DWISamples
VectorPointer	m_EAPSamples
int	m_ODFOrder
VectorPointer	m_ODFSamples
SamplingSchemeQSpacePointer	m_SamplingSchemeQSpace
SamplingSchemeRSpacePointer	m_SamplingSchemeRSpace

Private Member Functions
	DiffusionModelGenerator (const Self &)
void	operator= (const Self &)

Member Typedef Documentation

template<class PreciseType = double>

typedef SmartPointer<const Self> itk::DiffusionModelGenerator< PreciseType >::ConstPointer

Definition at line 42 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef utl_shared_ptr<MatrixType> itk::DiffusionModelGenerator< PreciseType >::MatrixPointer

Definition at line 52 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef vnl_matrix<double> itk::DiffusionModelGenerator< PreciseType >::MatrixType

Definition at line 48 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef SmartPointer<Self> itk::DiffusionModelGenerator< PreciseType >::Pointer

Definition at line 41 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef SamplingSchemeQSpaceType::PointType itk::DiffusionModelGenerator< PreciseType >::PointType

Definition at line 63 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef SamplingSchemeQSpaceType::Pointer itk::DiffusionModelGenerator< PreciseType >::SamplingSchemeQSpacePointer

Definition at line 58 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef SamplingSchemeQSpace<double> itk::DiffusionModelGenerator< PreciseType >::SamplingSchemeQSpaceType

Definition at line 57 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef SamplingSchemeRSpaceType::Pointer itk::DiffusionModelGenerator< PreciseType >::SamplingSchemeRSpacePointer

Definition at line 61 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef SamplingScheme3D<double> itk::DiffusionModelGenerator< PreciseType >::SamplingSchemeRSpaceType

Definition at line 60 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef DiffusionModelGenerator itk::DiffusionModelGenerator< PreciseType >::Self

Standard class typedefs.

Definition at line 39 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef utl_shared_ptr<STDVectorType > itk::DiffusionModelGenerator< PreciseType >::STDVectorPointer

Definition at line 55 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef std::vector<double> itk::DiffusionModelGenerator< PreciseType >::STDVectorType

Definition at line 54 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef Object itk::DiffusionModelGenerator< PreciseType >::Superclass

Definition at line 40 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef utl_shared_ptr<VectorType> itk::DiffusionModelGenerator< PreciseType >::VectorPointer

Definition at line 53 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

typedef vnl_vector<double> itk::DiffusionModelGenerator< PreciseType >::VectorType

Definition at line 51 of file itkDiffusionModelGenerator.h.

Constructor & Destructor Documentation

template<class PreciseType = double>

itk::DiffusionModelGenerator< PreciseType >::DiffusionModelGenerator ( )

inlineprotected

DiffusionModelGenerator constructor

Definition at line 102 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

virtual itk::DiffusionModelGenerator< PreciseType >::~DiffusionModelGenerator ( )

inlineprotectedvirtual

Definition at line 112 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

itk::DiffusionModelGenerator< PreciseType >::DiffusionModelGenerator ( const Self &  )

private

Member Function Documentation

template<class PreciseType = double>

virtual void itk::DiffusionModelGenerator< PreciseType >::ComputeDWISamples ( )

inlinevirtual

Reimplemented in itk::CylinderModelGenerator< PreciseType >.

Definition at line 81 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

virtual void itk::DiffusionModelGenerator< PreciseType >::ComputeEAPSamples ( )

inlinevirtual

Reimplemented in itk::CylinderModelGenerator< PreciseType >.

Definition at line 85 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

virtual void itk::DiffusionModelGenerator< PreciseType >::ComputeODFSamples ( )

inlinevirtual

Reimplemented in itk::CylinderModelGenerator< PreciseType >.

Definition at line 89 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

virtual::itk::LightObject::Pointer itk::DiffusionModelGenerator< PreciseType >::CreateAnother

(

void

)

const

template<class PreciseType = double>

virtual VectorPointer itk::DiffusionModelGenerator< PreciseType >::GetDWISamples ( )

virtual

template<class PreciseType = double>

virtual VectorPointer itk::DiffusionModelGenerator< PreciseType >::GetEAPSamples ( )

virtual

template<class PreciseType = double>

virtual const char* itk::DiffusionModelGenerator< PreciseType >::GetNameOfClass ( ) const

virtual

Standard part of every itk Object.

Reimplemented in itk::CylinderModelGenerator< PreciseType >.

template<class PreciseType = double>

virtual int itk::DiffusionModelGenerator< PreciseType >::GetODFOrder ( )

virtual

template<class PreciseType = double>

virtual VectorPointer itk::DiffusionModelGenerator< PreciseType >::GetODFSamples ( )

virtual

template<class PreciseType = double>

LightObject::Pointer itk::DiffusionModelGenerator< PreciseType >::InternalClone ( ) const

inlineprotected

Definition at line 133 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

itk::DiffusionModelGenerator< PreciseType >::itkGetObjectMacro	(	SamplingSchemeQSpace	,
		SamplingSchemeQSpaceType
	)

template<class PreciseType = double>

itk::DiffusionModelGenerator< PreciseType >::itkGetObjectMacro	(	SamplingSchemeRSpace	,
		SamplingSchemeRSpaceType
	)

template<class PreciseType = double>

static Pointer itk::DiffusionModelGenerator< PreciseType >::New ( )

static

Method for creation through the object factory.

template<class PreciseType = double>

void itk::DiffusionModelGenerator< PreciseType >::operator= ( const Self &  )

private

template<class PreciseType = double>

void itk::DiffusionModelGenerator< PreciseType >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

inlineprotected

Definition at line 116 of file itkDiffusionModelGenerator.h.

References PrintVar1, and utl::PrintVnlVector().

Here is the call graph for this function:

template<class PreciseType = double>

virtual void itk::DiffusionModelGenerator< PreciseType >::Rotate ( const MatrixType &  mat )

inlinevirtual

Reimplemented in itk::CylinderModelGenerator< PreciseType >.

Definition at line 77 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

virtual void itk::DiffusionModelGenerator< PreciseType >::SetODFOrder ( int  _arg )

virtual

template<class PreciseType = double>

virtual void itk::DiffusionModelGenerator< PreciseType >::SetSamplingSchemeQSpace ( SamplingSchemeQSpaceType *  _arg )

virtual

template<class PreciseType = double>

virtual void itk::DiffusionModelGenerator< PreciseType >::SetSamplingSchemeRSpace ( SamplingSchemeRSpaceType *  _arg )

virtual

template<class PreciseType = double>

virtual void itk::DiffusionModelGenerator< PreciseType >::VerifyInputParameters ( ) const

inlinevirtual

Definition at line 93 of file itkDiffusionModelGenerator.h.

References utlGlobalException.

Member Data Documentation

template<class PreciseType = double>

VectorPointer itk::DiffusionModelGenerator< PreciseType >::m_DWISamples

protected

Definition at line 161 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

VectorPointer itk::DiffusionModelGenerator< PreciseType >::m_EAPSamples

protected

Definition at line 163 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

int itk::DiffusionModelGenerator< PreciseType >::m_ODFOrder

protected

Definition at line 159 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

VectorPointer itk::DiffusionModelGenerator< PreciseType >::m_ODFSamples

protected

Definition at line 162 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

SamplingSchemeQSpacePointer itk::DiffusionModelGenerator< PreciseType >::m_SamplingSchemeQSpace

protected

Sampling Scheme in q-space for non-negativity constraint

Definition at line 155 of file itkDiffusionModelGenerator.h.

template<class PreciseType = double>

SamplingSchemeRSpacePointer itk::DiffusionModelGenerator< PreciseType >::m_SamplingSchemeRSpace

protected

Sampling Scheme in r-space for non-negativity constraint

Definition at line 157 of file itkDiffusionModelGenerator.h.

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The documentation for this class was generated from the following file:

• Modules/DiffusionModels/include/itkDiffusionModelGenerator.h