#include <itkFiberTracts.h>

Inheritance diagram for itk::FiberTracts< TValue >:

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Detailed Description

template<typename TValue = double>
class itk::FiberTracts< TValue >

Definition at line 26 of file itkFiberTracts.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef FiberContainerType::Pointer	FiberContainerPointer

typedef VectorContainer< unsigned int, FiberPointer >	FiberContainerType

typedef FiberType::Pointer	FiberPointer

typedef Fiber< ValueType >	FiberType

typedef std::shared_ptr< HeaderType >	HeaderPointer

typedef TrackVisHeaderType	HeaderType

typedef SmartPointer< Self >	Pointer

typedef FiberTracts	Self

typedef DataObject	Superclass

typedef FiberType::TractPointer	TractPointer

typedef FiberType::TractType	TractType

typedef TValue	ValueType

typedef TractType::VertexType	VertexType

Public Member Functions
void	AppendFiber (const FiberPointer fiber)

void	AppendFibers (const Pointer fibers)

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

FiberTracts< TValue >::Pointer	DeepClone () const

FiberPointer	GetFiber (const int index) const

virtual const char *	GetNameOfClass () const

int	GetNumberOfFibers () const

int	GetNumberOfPoints () const

void	GetPointStats (std::vector< double > &numPointsStats, std::vector< double > &pointDistStats) const

bool	HasPropertyName (const std::string &name) const

bool	HasScalarName (const std::string &name) const

	itkSetGetMacro (Header, HeaderPointer)

	itkSetGetMacro (Fibers, FiberContainerPointer)

void	PrintFibersHeader (std::ostream &os=std::cout, Indent indent=0) const

void	RemovePropertiesByName (const std::string &name)

void	RemoveScalarsByName (const std::string &name)

Pointer	SelectByBallROI (double x, double y, double z, double radius)

Pointer	SelectByIndicesOfTracts (const std::vector< int > &indices)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	FiberTracts ()

LightObject::Pointer	InternalClone () const ITK_OVERRIDE

virtual void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE

	~FiberTracts ()

Protected Attributes
FiberContainerPointer	m_Fibers = FiberContainerType::New()

HeaderPointer	m_Header

Private Member Functions
	FiberTracts (const Self &) ITK_DELETE_FUNCTION

void	operator= (const Self &) ITK_DELETE_FUNCTION

Member Typedef Documentation

template<typename TValue = double>

typedef SmartPointer< const Self > itk::FiberTracts< TValue >::ConstPointer

Definition at line 33 of file itkFiberTracts.h.

template<typename TValue = double>

typedef FiberContainerType::Pointer itk::FiberTracts< TValue >::FiberContainerPointer

Definition at line 51 of file itkFiberTracts.h.

template<typename TValue = double>

typedef VectorContainer< unsigned int, FiberPointer > itk::FiberTracts< TValue >::FiberContainerType

Definition at line 50 of file itkFiberTracts.h.

template<typename TValue = double>

typedef FiberType::Pointer itk::FiberTracts< TValue >::FiberPointer

Definition at line 45 of file itkFiberTracts.h.

template<typename TValue = double>

typedef Fiber<ValueType> itk::FiberTracts< TValue >::FiberType

Definition at line 44 of file itkFiberTracts.h.

template<typename TValue = double>

typedef std::shared_ptr<HeaderType> itk::FiberTracts< TValue >::HeaderPointer

Definition at line 42 of file itkFiberTracts.h.

template<typename TValue = double>

typedef TrackVisHeaderType itk::FiberTracts< TValue >::HeaderType

Definition at line 41 of file itkFiberTracts.h.

template<typename TValue = double>

typedef SmartPointer< Self > itk::FiberTracts< TValue >::Pointer

Definition at line 32 of file itkFiberTracts.h.

template<typename TValue = double>

typedef FiberTracts itk::FiberTracts< TValue >::Self

Standard class typedefs.

Definition at line 30 of file itkFiberTracts.h.

template<typename TValue = double>

typedef DataObject itk::FiberTracts< TValue >::Superclass

Definition at line 31 of file itkFiberTracts.h.

template<typename TValue = double>

typedef FiberType::TractPointer itk::FiberTracts< TValue >::TractPointer

Definition at line 47 of file itkFiberTracts.h.

template<typename TValue = double>

typedef FiberType::TractType itk::FiberTracts< TValue >::TractType

Definition at line 46 of file itkFiberTracts.h.

template<typename TValue = double>

typedef TValue itk::FiberTracts< TValue >::ValueType

Definition at line 37 of file itkFiberTracts.h.

template<typename TValue = double>

typedef TractType::VertexType itk::FiberTracts< TValue >::VertexType

Definition at line 48 of file itkFiberTracts.h.

Constructor & Destructor Documentation

template<typename TValue = double>

itk::FiberTracts< TValue >::FiberTracts ( )

inlineprotected

Definition at line 106 of file itkFiberTracts.h.

template<typename TValue = double>

itk::FiberTracts< TValue >::~FiberTracts ( )

inlineprotected

Definition at line 109 of file itkFiberTracts.h.

References itk::FiberTracts< TValue >::InternalClone(), ITK_OVERRIDE, and itk::FiberTracts< TValue >::PrintSelf().

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template<typename TValue = double>

itk::FiberTracts< TValue >::FiberTracts ( const Self & )

private

Member Function Documentation

template<class TValue >

void itk::FiberTracts< TValue >::AppendFiber ( const FiberPointer fiber )

Append a fiber. Should have the same number of scalars and the same number of properties.

Definition at line 151 of file itkFiberTracts.hxx.

References itk::FiberTracts< TValue >::AppendFibers().

Referenced by itk::FiberTracts< TValue >::HasScalarName(), and itk::FiberTracts< TValue >::SelectByBallROI().

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template<class TValue >

void itk::FiberTracts< TValue >::AppendFibers ( const Pointer fibers )

Append fibers. Should have the same number of scalars and the same number of properties.

Definition at line 160 of file itkFiberTracts.hxx.

References itk::IsSameStructure(), itk::FiberTracts< TValue >::PrintSelf(), and utlGlobalException.

Referenced by itk::FiberTracts< TValue >::AppendFiber(), and itk::FiberTracts< TValue >::HasScalarName().

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template<typename TValue = double>

virtual::itk::LightObject::Pointer itk::FiberTracts< TValue >::CreateAnother ( void ) const

template<class TValue >

FiberTracts< TValue >::Pointer itk::FiberTracts< TValue >::DeepClone ( ) const

Definition at line 41 of file itkFiberTracts.hxx.

References itk::CopyTrackvisHeader(), and itk::FiberTracts< TValue >::GetNumberOfPoints().

Referenced by itk::FiberTracts< TValue >::GetFiber(), and itk::FiberTracts< TValue >::InternalClone().

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template<typename TValue = double>

FiberPointer itk::FiberTracts< TValue >::GetFiber ( const int index ) const

inline

Definition at line 64 of file itkFiberTracts.h.

References itk::FiberTracts< TValue >::DeepClone(), and itk::FiberTracts< TValue >::m_Fibers.

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template<typename TValue = double>

virtual const char* itk::FiberTracts< TValue >::GetNameOfClass ( ) const

virtual

template<typename TValue = double>

int itk::FiberTracts< TValue >::GetNumberOfFibers ( ) const

inline

Definition at line 57 of file itkFiberTracts.h.

References itk::FiberTracts< TValue >::GetNumberOfPoints(), and itk::FiberTracts< TValue >::m_Fibers.

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template<class TValue >

int itk::FiberTracts< TValue >::GetNumberOfPoints ( ) const

Definition at line 58 of file itkFiberTracts.hxx.

References itk::FiberTracts< TValue >::GetPointStats().

Referenced by itk::FiberTracts< TValue >::DeepClone(), and itk::FiberTracts< TValue >::GetNumberOfFibers().

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template<class TValue >

void itk::FiberTracts< TValue >::GetPointStats	(	std::vector< double > &	numPointsStats,
		std::vector< double > &	pointDistStats
	)		const

Get the stats of the number of points in each tract, and the stats of distances between two points in each tract.

Definition at line 69 of file itkFiberTracts.hxx.

References utl::GetContainerStats(), and itk::FiberTracts< TValue >::RemoveScalarsByName().

Referenced by itk::FiberTracts< TValue >::GetNumberOfPoints(), and itk::FiberTracts< TValue >::HasScalarName().

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template<typename TValue = double>

bool itk::FiberTracts< TValue >::HasPropertyName ( const std::string & name ) const

inline

Definition at line 76 of file itkFiberTracts.h.

References itk::HasPropertyName(), and itk::FiberTracts< TValue >::m_Header.

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template<typename TValue = double>

bool itk::FiberTracts< TValue >::HasScalarName ( const std::string & name ) const

inline

Definition at line 80 of file itkFiberTracts.h.

References itk::FiberTracts< TValue >::AppendFiber(), itk::FiberTracts< TValue >::AppendFibers(), itk::FiberTracts< TValue >::GetPointStats(), itk::HasScalarName(), itk::FiberTracts< TValue >::m_Header, itk::FiberTracts< TValue >::RemovePropertiesByName(), itk::FiberTracts< TValue >::RemoveScalarsByName(), itk::FiberTracts< TValue >::SelectByBallROI(), and itk::FiberTracts< TValue >::SelectByIndicesOfTracts().

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template<class TValue >

LightObject::Pointer itk::FiberTracts< TValue >::InternalClone ( ) const

protected

Definition at line 23 of file itkFiberTracts.hxx.

References itk::FiberTracts< TValue >::DeepClone().

Referenced by itk::FiberTracts< TValue >::~FiberTracts().

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template<typename TValue = double>

itk::FiberTracts< TValue >::itkSetGetMacro	(	Header	,
		HeaderPointer
	)

template<typename TValue = double>

itk::FiberTracts< TValue >::itkSetGetMacro	(	Fibers	,
		FiberContainerPointer
	)

template<typename TValue = double>

static Pointer itk::FiberTracts< TValue >::New ( )

static

template<typename TValue = double>

void itk::FiberTracts< TValue >::operator= ( const Self & )

private

template<typename TValue = double>

void itk::FiberTracts< TValue >::PrintFibersHeader	(	std::ostream &	os = `std::cout`,
		Indent	indent = `0`
	)		const

inline

Definition at line 71 of file itkFiberTracts.h.

References itk::FiberTracts< TValue >::m_Header, and itk::PrintTractVisHeader().

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template<class TValue >

void itk::FiberTracts< TValue >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Definition at line 170 of file itkFiberTracts.hxx.

References utl::PrintVector(), and utlSAGlobalException.

Referenced by itk::FiberTracts< TValue >::AppendFibers(), and itk::FiberTracts< TValue >::~FiberTracts().

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template<class TValue >

void itk::FiberTracts< TValue >::RemovePropertiesByName ( const std::string & name )

remove properties by name

Definition at line 98 of file itkFiberTracts.hxx.

References utl::CovertChar2DArrayToStringArray(), itk::RemovePropertyName(), and itk::FiberTracts< TValue >::SelectByIndicesOfTracts().

Referenced by itk::FiberTracts< TValue >::HasScalarName(), and itk::FiberTracts< TValue >::RemoveScalarsByName().

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template<class TValue >

void itk::FiberTracts< TValue >::RemoveScalarsByName ( const std::string & name )

remove scalars by name

Definition at line 86 of file itkFiberTracts.hxx.

References utl::CovertChar2DArrayToStringArray(), itk::FiberTracts< TValue >::RemovePropertiesByName(), and itk::RemoveScalarName().

Referenced by itk::FiberTracts< TValue >::GetPointStats(), and itk::FiberTracts< TValue >::HasScalarName().

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template<class TValue >

FiberTracts< TValue >::Pointer itk::FiberTracts< TValue >::SelectByBallROI	(	double	x,
		double	y,
		double	z,
		double	radius
	)

Get fiber tracts across in a ball ROI (origin x,y,z and radius)

Definition at line 126 of file itkFiberTracts.hxx.

References itk::FiberTracts< TValue >::AppendFiber(), and itk::CopyTrackvisHeader().

Referenced by itk::FiberTracts< TValue >::HasScalarName(), and itk::FiberTracts< TValue >::SelectByIndicesOfTracts().

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template<class TValue >

FiberTracts< TValue >::Pointer itk::FiberTracts< TValue >::SelectByIndicesOfTracts ( const std::vector< int > & indices )

Get fiber tracts based on indices

Definition at line 110 of file itkFiberTracts.hxx.

References itk::CopyTrackvisHeader(), and itk::FiberTracts< TValue >::SelectByBallROI().

Referenced by itk::FiberTracts< TValue >::HasScalarName(), and itk::FiberTracts< TValue >::RemovePropertiesByName().

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Member Data Documentation

template<typename TValue = double>

FiberContainerPointer itk::FiberTracts< TValue >::m_Fibers = FiberContainerType::New()

protected

Definition at line 117 of file itkFiberTracts.h.

Referenced by itk::FiberTracts< TValue >::GetFiber(), and itk::FiberTracts< TValue >::GetNumberOfFibers().

template<typename TValue = double>

HeaderPointer itk::FiberTracts< TValue >::m_Header

protected

Definition at line 115 of file itkFiberTracts.h.

Referenced by itk::FiberTracts< TValue >::HasPropertyName(), itk::FiberTracts< TValue >::HasScalarName(), and itk::FiberTracts< TValue >::PrintFibersHeader().

The documentation for this class was generated from the following files:

Modules/Tractography/include/itkFiberTracts.h
Modules/Tractography/include/itkFiberTracts.hxx

Detailed Description

template<typename TValue = double> class itk::FiberTracts< TValue >

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Member Functions

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<typename TValue = double>
class itk::FiberTracts< TValue >