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itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh > Class Template Reference
Visualization

#include <itkMeshFromPeaksImageFilter.h>

+ Inheritance diagram for itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >:
+ Collaboration diagram for itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >:

Detailed Description

template<class TInputImage, class TOutputMesh = vtkPolyData>
class itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >

Generate a mesh from given peaks.

Author
Jian Cheng (jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om)

Definition at line 45 of file itkMeshFromPeaksImageFilter.h.

Public Types

typedef SmartPointer< const Self > ConstPointer
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::IndexType InputImageIndexType
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::PointType InputImagePointType
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef InputImageType::SizeType InputImageSizeType
 
typedef InputImageType::SizeValueType InputImageSizeValueType
 
typedef InputImageType::SpacingType InputImageSpacingType
 
typedef TInputImage InputImageType
 
typedef utl_shared_ptr< MatrixType > MatrixPointer
 
typedef utl::NDArray< double, 2 > MatrixType
 
typedef Superclass::OutputMeshCellArrayType OutputMeshCellArrayType
 
typedef Superclass::OutputMeshPointsType OutputMeshPointsType
 
typedef Superclass::OutputMeshPolyDataPointer OutputMeshPolyDataPointer
 
typedef TOutputMesh OutputMeshPolyDataType
 
typedef Superclass::OutputMeshRGBType OutputMeshRGBType
 
typedef Superclass::OutputMeshScalarType OutputMeshScalarType
 
typedef SmartPointer< Self > Pointer
 
typedef MeshFromPeaksImageFilter Self
 
typedef utl_shared_ptr< STDVectorType > STDVectorPointer
 
typedef std::vector< double > STDVectorType
 
typedef MeshFromImageImageFilter< TInputImage, TOutputMesh > Superclass
 
typedef utl_shared_ptr< VectorType > VectorPointer
 
typedef utl::NDArray< double, 1 > VectorType
 
- Public Types inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >
enum  ColorSchemeType {
  UNKNOWN =0,
  FIXED,
  DIRECTION,
  MAGNITUDE
}
 
typedef SmartPointer< const Self > ConstPointer
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::IndexType InputImageIndexType
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::PointType InputImagePointType
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef InputImageType::SizeType InputImageSizeType
 
typedef InputImageType::SizeValueType InputImageSizeValueType
 
typedef InputImageType::SpacingType InputImageSpacingType
 
typedef TInputImage InputImageType
 
typedef utl_shared_ptr< MatrixType > MatrixPointer
 
typedef utl::NDArray< double, 2 > MatrixType
 
typedef vtkCellArray OutputMeshCellArrayType
 
typedef vtkPoints OutputMeshPointsType
 
typedef vtkSmartPointer< OutputMeshPolyDataType > OutputMeshPolyDataPointer
 
typedef TOutputMesh OutputMeshPolyDataType
 
typedef vtkUnsignedCharArray OutputMeshRGBType
 
typedef vtkDoubleArray OutputMeshScalarType
 
typedef SmartPointer< Self > Pointer
 
typedef MeshFromImageImageFilter Self
 
typedef utl_shared_ptr< STDVectorType > STDVectorPointer
 
typedef std::vector< double > STDVectorType
 
typedef MaskedImageToImageFilter< TInputImage, TInputImage > Superclass
 
typedef utl_shared_ptr< VectorType > VectorPointer
 
typedef utl::NDArray< double, 1 > VectorType
 
- Public Types inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage >
typedef SmartPointer< const Self > ConstPointer
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::IndexType InputImageIndexType
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef InputImageType::SizeType InputImageSizeType
 
typedef InputImageType::SpacingType InputImageSpacingType
 
typedef TInputImage InputImageType
 
typedef LoggerType::Pointer LoggerPointer
 
typedef ThreadLogger LoggerType
 
typedef utl_shared_ptr< LoggerVectorType > LoggerVectorPointer
 
typedef std::vector< LoggerPointer > LoggerVectorType
 
typedef MaskImageType::Pointer MaskImagePointer
 
typedef Image< double, 3 > MaskImageType
 
typedef OutputImageType::IndexType OutputImageIndexType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef OutputImageType::SizeType OutputImageSizeType
 
typedef OutputImageType::SpacingType OutputImageSpacingType
 
typedef TInputImage OutputImageType
 
typedef SmartPointer< Self > Pointer
 
typedef MaskedImageToImageFilter Self
 
typedef ImageToImageFilter< TInputImage, TInputImage > Superclass
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const char * GetNameOfClass () const
 
 itkSetGetMacro (PeakType, PeakType)
 
 itkSetGetMacro (TubeRadius, double)
 
 itkSetGetMacro (MaxNumberOfPeaks, int)
 
void SetColorPeak (double r, double g, double b)
 
- Public Member Functions inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
std::vector< int > GetBoxView () const
 
virtual ColorSchemeType GetColorScheme ()
 
std::vector< int > GetFlip () const
 
OutputMeshPolyDataPointer GetOutput ()
 
virtual double GetScale ()
 
std::vector< int > GetSliceView () const
 
void SetBoxView (const int x0, const int x1, const int y0, const int y1, const int z0, const int z1)
 
virtual void SetColorScheme (ColorSchemeType _arg)
 
void SetFlip (const int flipx, const int flipy, const int flipz)
 
virtual void SetScale (double _arg)
 
void SetSliceView (const int coronal, const int sagittal, const int transverse)
 
- Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const LoggerType * GetLogger () const
 
virtual const MaskImageType * GetMaskImage () const
 
bool IsMaskUsed ()
 
 itkGetObjectMacro (MaskImage, MaskImageType)
 
 itkGetObjectMacro (Logger, LoggerType)
 
 itkSetGetMacro (LogLevel, int)
 
virtual void SetLogger (LoggerType *_arg)
 
virtual void SetMaskImage (MaskImageType *_arg)
 
void SetMaskImage (const std::string &file)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage >
static Pointer New ()
 

Protected Member Functions

virtual void GenerateData () ITK_OVERRIDE
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
 MeshFromPeaksImageFilter ()
 
void PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
 
void VerifyInputParameters () const ITK_OVERRIDE
 
 ~MeshFromPeaksImageFilter ()
 
- Protected Member Functions inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >
virtual void AllocateOutputs () ITK_OVERRIDE
 
virtual void GenerateOutputInformation () ITK_OVERRIDE
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
virtual bool IsPixelIndexVisible (const InputImageIndexType &index)
 
 MeshFromImageImageFilter ()
 
 ~MeshFromImageImageFilter ()
 
- Protected Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage >
void CreateLoggerVector ()
 
virtual void InitializeThreadedLibraries ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
 MaskedImageToImageFilter ()
 
std::string ThreadIDToString () const
 
virtual void VerifyMaskInformation () const
 
void WriteLogger (const std::string &str, const LoggerBase::PriorityLevelType level=LoggerBase::DEBUG) const
 
virtual ~MaskedImageToImageFilter ()
 

Protected Attributes

double m_ColorPeak [3]
 
int m_MaxNumberOfPeaks
 
PeakType m_PeakType
 
double m_TubeRadius
 
- Protected Attributes inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >
std::vector< int > m_BoxView = std::vector<int>(6,-1)
 
ColorSchemeType m_ColorScheme =UNKNOWN
 
std::vector< int > m_Flip = std::vector<int>(3, 0)
 
OutputMeshPolyDataPointer m_Mesh = OutputMeshPolyDataType::New()
 
double m_Scale =1.0
 
std::vector< int > m_SliceView = std::vector<int>(3,-1)
 
- Protected Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage >
LoggerPointer m_Logger
 
LoggerVectorPointer m_LoggerVector
 
int m_LogLevel
 
MaskImagePointer m_MaskImage
 
int m_ThreadID
 

Private Member Functions

 MeshFromPeaksImageFilter (const Self &)
 
void operator= (const Self &)
 

Additional Inherited Members

- Static Public Attributes inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >
static const unsigned int OrientationDimension = 3
 
- Static Public Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 

Member Typedef Documentation

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef SmartPointer<const Self> itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::ConstPointer

Definition at line 52 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef InputImageType::ConstPointer itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImageConstPointer

Definition at line 63 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef InputImageType::IndexType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImageIndexType

Definition at line 64 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef InputImageType::PixelType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImagePixelType

Definition at line 68 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef InputImageType::Pointer itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImagePointer

Definition at line 62 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef InputImageType::PointType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImagePointType

Definition at line 70 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef InputImageType::RegionType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImageRegionType

Definition at line 69 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef InputImageType::SizeType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImageSizeType

Definition at line 65 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef InputImageType::SizeValueType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImageSizeValueType

Definition at line 66 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef InputImageType::SpacingType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImageSpacingType

Definition at line 67 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef TInputImage itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InputImageType

Definition at line 58 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef utl_shared_ptr<MatrixType> itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::MatrixPointer

Definition at line 84 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef utl::NDArray<double,2> itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::MatrixType

Orientation Matrices

Definition at line 82 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef Superclass::OutputMeshCellArrayType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::OutputMeshCellArrayType

Definition at line 76 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef Superclass::OutputMeshPointsType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::OutputMeshPointsType

Definition at line 75 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef Superclass::OutputMeshPolyDataPointer itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::OutputMeshPolyDataPointer

Definition at line 77 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef TOutputMesh itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::OutputMeshPolyDataType

Definition at line 73 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef Superclass::OutputMeshRGBType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::OutputMeshRGBType

Definition at line 79 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef Superclass::OutputMeshScalarType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::OutputMeshScalarType

Definition at line 78 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef SmartPointer<Self> itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::Pointer

Definition at line 51 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef MeshFromPeaksImageFilter itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::Self

Definition at line 49 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef utl_shared_ptr<STDVectorType > itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::STDVectorPointer

Definition at line 87 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef std::vector<double> itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::STDVectorType

Definition at line 86 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef MeshFromImageImageFilter<TInputImage, TOutputMesh> itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::Superclass

Definition at line 50 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef utl_shared_ptr<VectorType> itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::VectorPointer

Definition at line 85 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
typedef utl::NDArray<double,1> itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::VectorType

Definition at line 83 of file itkMeshFromPeaksImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputMesh >
itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::MeshFromPeaksImageFilter ( )
protected

Definition at line 22 of file itkMeshFromPeaksImageFilter.hxx.

References itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InternalClone(), and itk::XYZV.

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template<class TInputImage , class TOutputMesh = vtkPolyData>
itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::~MeshFromPeaksImageFilter ( )
inlineprotected

Definition at line 101 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::MeshFromPeaksImageFilter ( const Self &  )
private

Member Function Documentation

template<class TInputImage , class TOutputMesh = vtkPolyData>
virtual::itk::LightObject::Pointer itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::CreateAnother ( void  ) const
template<class TInputImage , class TOutputMesh >
void itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::GenerateData ( void  )
protectedvirtual

Definition at line 58 of file itkMeshFromPeaksImageFilter.hxx.

References itk::PeakContainerHelper::GetDimensionPerPeak(), itk::PeakContainerHelper::GetNumberOfPeaks(), itk::PeakContainerHelper::GetPeak(), and utl::min().

Referenced by itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InternalClone().

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template<class TInputImage , class TOutputMesh = vtkPolyData>
virtual const char* itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods)

Reimplemented from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >.

template<class TInputImage , class TOutputMesh >
LightObject::Pointer itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::InternalClone ( ) const
protected

Definition at line 35 of file itkMeshFromPeaksImageFilter.hxx.

References itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::GenerateData().

Referenced by itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::MeshFromPeaksImageFilter().

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template<class TInputImage , class TOutputMesh = vtkPolyData>
itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::itkSetGetMacro ( PeakType  ,
PeakType   
)
template<class TInputImage , class TOutputMesh = vtkPolyData>
itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::itkSetGetMacro ( TubeRadius  ,
double   
)
template<class TInputImage , class TOutputMesh = vtkPolyData>
itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::itkSetGetMacro ( MaxNumberOfPeaks  ,
int   
)
template<class TInputImage , class TOutputMesh = vtkPolyData>
static Pointer itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::New ( )
static

Method for creation through the object factory.

template<class TInputImage , class TOutputMesh = vtkPolyData>
void itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::operator= ( const Self &  )
private
template<class TInputImage , class TOutputMesh = vtkPolyData>
void itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
inlineprotectedvirtual

Reimplemented from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >.

Definition at line 112 of file itkMeshFromPeaksImageFilter.h.

References itk::PeakContainerHelper::GetString(), ITK_OVERRIDE, and PrintVar.

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template<class TInputImage , class TOutputMesh = vtkPolyData>
void itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::SetColorPeak ( double  r,
double  g,
double  b 
)
inline

Definition at line 93 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
void itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::VerifyInputParameters ( ) const
inlineprotectedvirtual

Reimplemented from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >.

Definition at line 104 of file itkMeshFromPeaksImageFilter.h.

References ITK_OVERRIDE, and utlSAException.

Member Data Documentation

template<class TInputImage , class TOutputMesh = vtkPolyData>
double itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::m_ColorPeak[3]
protected

Definition at line 126 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
int itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::m_MaxNumberOfPeaks
protected

If m_MaxNumberOfPeaks>0, then only visualize the first m_MaxNumberOfPeaks peaks.

Definition at line 129 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
PeakType itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::m_PeakType
protected

Definition at line 121 of file itkMeshFromPeaksImageFilter.h.

template<class TInputImage , class TOutputMesh = vtkPolyData>
double itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >::m_TubeRadius
protected

If it is positive, use tubes for peaks. If it is non-positive, use lines.

Definition at line 124 of file itkMeshFromPeaksImageFilter.h.

The documentation for this class was generated from the following files:
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