DMRITool
v0.1.1-139-g860d86b4
Diffusion MRI Tool
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#include <itkMeshFromImageImageFilter.h>
Compute mesh from SH coefficients.
Definition at line 49 of file itkMeshFromImageImageFilter.h.
Public Types | |
enum | ColorSchemeType { UNKNOWN =0, FIXED, DIRECTION, MAGNITUDE } |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::IndexType | InputImageIndexType |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::PointType | InputImagePointType |
typedef InputImageType::RegionType | InputImageRegionType |
typedef InputImageType::SizeType | InputImageSizeType |
typedef InputImageType::SizeValueType | InputImageSizeValueType |
typedef InputImageType::SpacingType | InputImageSpacingType |
typedef TInputImage | InputImageType |
typedef utl_shared_ptr< MatrixType > | MatrixPointer |
typedef utl::NDArray< double, 2 > | MatrixType |
typedef vtkCellArray | OutputMeshCellArrayType |
typedef vtkPoints | OutputMeshPointsType |
typedef vtkSmartPointer< OutputMeshPolyDataType > | OutputMeshPolyDataPointer |
typedef TOutputMesh | OutputMeshPolyDataType |
typedef vtkUnsignedCharArray | OutputMeshRGBType |
typedef vtkDoubleArray | OutputMeshScalarType |
typedef SmartPointer< Self > | Pointer |
typedef MeshFromImageImageFilter | Self |
typedef utl_shared_ptr< STDVectorType > | STDVectorPointer |
typedef std::vector< double > | STDVectorType |
typedef MaskedImageToImageFilter< TInputImage, TInputImage > | Superclass |
typedef utl_shared_ptr< VectorType > | VectorPointer |
typedef utl::NDArray< double, 1 > | VectorType |
Public Types inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::IndexType | InputImageIndexType |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::RegionType | InputImageRegionType |
typedef InputImageType::SizeType | InputImageSizeType |
typedef InputImageType::SpacingType | InputImageSpacingType |
typedef TInputImage | InputImageType |
typedef LoggerType::Pointer | LoggerPointer |
typedef ThreadLogger | LoggerType |
typedef utl_shared_ptr< LoggerVectorType > | LoggerVectorPointer |
typedef std::vector< LoggerPointer > | LoggerVectorType |
typedef MaskImageType::Pointer | MaskImagePointer |
typedef Image< double, 3 > | MaskImageType |
typedef OutputImageType::IndexType | OutputImageIndexType |
typedef OutputImageType::PixelType | OutputImagePixelType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef OutputImageType::RegionType | OutputImageRegionType |
typedef OutputImageType::SizeType | OutputImageSizeType |
typedef OutputImageType::SpacingType | OutputImageSpacingType |
typedef TInputImage | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef MaskedImageToImageFilter | Self |
typedef ImageToImageFilter< TInputImage, TInputImage > | Superclass |
Public Member Functions | |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
std::vector< int > | GetBoxView () const |
virtual ColorSchemeType | GetColorScheme () |
std::vector< int > | GetFlip () const |
virtual const char * | GetNameOfClass () const |
OutputMeshPolyDataPointer | GetOutput () |
virtual double | GetScale () |
std::vector< int > | GetSliceView () const |
void | SetBoxView (const int x0, const int x1, const int y0, const int y1, const int z0, const int z1) |
virtual void | SetColorScheme (ColorSchemeType _arg) |
void | SetFlip (const int flipx, const int flipy, const int flipz) |
virtual void | SetScale (double _arg) |
void | SetSliceView (const int coronal, const int sagittal, const int transverse) |
Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
virtual const LoggerType * | GetLogger () const |
virtual const MaskImageType * | GetMaskImage () const |
bool | IsMaskUsed () |
itkGetObjectMacro (MaskImage, MaskImageType) | |
itkGetObjectMacro (Logger, LoggerType) | |
itkSetGetMacro (LogLevel, int) | |
virtual void | SetLogger (LoggerType *_arg) |
virtual void | SetMaskImage (MaskImageType *_arg) |
void | SetMaskImage (const std::string &file) |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
static Pointer | New () |
Static Public Attributes | |
static const unsigned int | OrientationDimension = 3 |
Static Public Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
static const unsigned int | InputImageDimension |
static const unsigned int | OutputImageDimension |
Protected Member Functions | |
virtual void | AllocateOutputs () ITK_OVERRIDE |
virtual void | GenerateOutputInformation () ITK_OVERRIDE |
LightObject::Pointer | InternalClone () const ITK_OVERRIDE |
virtual bool | IsPixelIndexVisible (const InputImageIndexType &index) |
MeshFromImageImageFilter () | |
void | PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE |
virtual void | VerifyInputParameters () const ITK_OVERRIDE |
~MeshFromImageImageFilter () | |
Protected Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
void | CreateLoggerVector () |
virtual void | InitializeThreadedLibraries () |
LightObject::Pointer | InternalClone () const ITK_OVERRIDE |
MaskedImageToImageFilter () | |
std::string | ThreadIDToString () const |
virtual void | VerifyMaskInformation () const |
void | WriteLogger (const std::string &str, const LoggerBase::PriorityLevelType level=LoggerBase::DEBUG) const |
virtual | ~MaskedImageToImageFilter () |
Protected Attributes | |
std::vector< int > | m_BoxView = std::vector<int>(6,-1) |
ColorSchemeType | m_ColorScheme =UNKNOWN |
std::vector< int > | m_Flip = std::vector<int>(3, 0) |
OutputMeshPolyDataPointer | m_Mesh = OutputMeshPolyDataType::New() |
double | m_Scale =1.0 |
std::vector< int > | m_SliceView = std::vector<int>(3,-1) |
Protected Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
LoggerPointer | m_Logger |
LoggerVectorPointer | m_LoggerVector |
int | m_LogLevel |
MaskImagePointer | m_MaskImage |
int | m_ThreadID |
Private Member Functions | |
MeshFromImageImageFilter (const Self &) | |
void | operator= (const Self &) |
typedef SmartPointer<const Self> itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::ConstPointer |
Definition at line 57 of file itkMeshFromImageImageFilter.h.
typedef InputImageType::ConstPointer itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImageConstPointer |
Definition at line 71 of file itkMeshFromImageImageFilter.h.
typedef InputImageType::IndexType itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImageIndexType |
Definition at line 72 of file itkMeshFromImageImageFilter.h.
typedef InputImageType::PixelType itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImagePixelType |
Definition at line 76 of file itkMeshFromImageImageFilter.h.
typedef InputImageType::Pointer itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImagePointer |
Definition at line 70 of file itkMeshFromImageImageFilter.h.
typedef InputImageType::PointType itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImagePointType |
Definition at line 78 of file itkMeshFromImageImageFilter.h.
typedef InputImageType::RegionType itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImageRegionType |
Definition at line 77 of file itkMeshFromImageImageFilter.h.
typedef InputImageType::SizeType itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImageSizeType |
Definition at line 73 of file itkMeshFromImageImageFilter.h.
typedef InputImageType::SizeValueType itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImageSizeValueType |
Definition at line 74 of file itkMeshFromImageImageFilter.h.
typedef InputImageType::SpacingType itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImageSpacingType |
Definition at line 75 of file itkMeshFromImageImageFilter.h.
typedef TInputImage itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::InputImageType |
Definition at line 69 of file itkMeshFromImageImageFilter.h.
typedef utl_shared_ptr<MatrixType> itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::MatrixPointer |
Definition at line 92 of file itkMeshFromImageImageFilter.h.
typedef utl::NDArray<double,2> itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::MatrixType |
Orientation Matrices
Definition at line 90 of file itkMeshFromImageImageFilter.h.
typedef vtkCellArray itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::OutputMeshCellArrayType |
Definition at line 83 of file itkMeshFromImageImageFilter.h.
typedef vtkPoints itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::OutputMeshPointsType |
Definition at line 82 of file itkMeshFromImageImageFilter.h.
typedef vtkSmartPointer<OutputMeshPolyDataType> itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::OutputMeshPolyDataPointer |
Definition at line 85 of file itkMeshFromImageImageFilter.h.
typedef TOutputMesh itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::OutputMeshPolyDataType |
Definition at line 80 of file itkMeshFromImageImageFilter.h.
typedef vtkUnsignedCharArray itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::OutputMeshRGBType |
Definition at line 87 of file itkMeshFromImageImageFilter.h.
typedef vtkDoubleArray itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::OutputMeshScalarType |
Definition at line 86 of file itkMeshFromImageImageFilter.h.
typedef SmartPointer<Self> itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::Pointer |
Definition at line 56 of file itkMeshFromImageImageFilter.h.
typedef MeshFromImageImageFilter itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::Self |
Standard class typedefs.
Definition at line 54 of file itkMeshFromImageImageFilter.h.
typedef utl_shared_ptr<STDVectorType > itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::STDVectorPointer |
Definition at line 95 of file itkMeshFromImageImageFilter.h.
typedef std::vector<double> itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::STDVectorType |
Definition at line 94 of file itkMeshFromImageImageFilter.h.
typedef MaskedImageToImageFilter<TInputImage, TInputImage> itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::Superclass |
Definition at line 55 of file itkMeshFromImageImageFilter.h.
typedef utl_shared_ptr<VectorType> itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::VectorPointer |
Definition at line 93 of file itkMeshFromImageImageFilter.h.
typedef utl::NDArray<double,1> itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::VectorType |
Definition at line 91 of file itkMeshFromImageImageFilter.h.
enum itk::MeshFromImageImageFilter::ColorSchemeType |
Enumerator | |
---|---|
UNKNOWN | |
FIXED | |
DIRECTION | |
MAGNITUDE |
Definition at line 97 of file itkMeshFromImageImageFilter.h.
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Definition at line 157 of file itkMeshFromImageImageFilter.h.
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Definition at line 163 of file itkMeshFromImageImageFilter.h.
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The output is m_Mesh, do not allocate output image
Definition at line 232 of file itkMeshFromImageImageFilter.h.
virtual::itk::LightObject::Pointer itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >::CreateAnother | ( | void | ) | const |
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the information of the output image is used for ThreadedGenerateData() in subclass
Definition at line 223 of file itkMeshFromImageImageFilter.h.
References itk::CopyImageInformation().
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Definition at line 122 of file itkMeshFromImageImageFilter.h.
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Definition at line 140 of file itkMeshFromImageImageFilter.h.
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Run-time type information (and related methods)
Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TInputImage >.
Reimplemented in itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >, itk::MeshFromContinuousSphericalFunctionImageFilter< TInputImage, TOutputMesh >, itk::MeshFromDiscreteFiberODFImageFilter< TInputImage, TOutputMesh >, itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >, itk::MeshFromSphericalFunctionTessellatedSamplesImageFilter< TInputImage, TOutputMesh >, itk::MeshFromTensorImageFilter< TInputImage, TOutputMesh >, and itk::MeshFromSHCoefficientsImageFilter< TInputImage, TOutputMesh >.
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Access to Mesh
Definition at line 151 of file itkMeshFromImageImageFilter.h.
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Definition at line 131 of file itkMeshFromImageImageFilter.h.
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Definition at line 201 of file itkMeshFromImageImageFilter.h.
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Definition at line 169 of file itkMeshFromImageImageFilter.h.
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Method for creation through the object factory.
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Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TInputImage >.
Reimplemented in itk::MeshFromTensorImageFilter< TInputImage, TOutputMesh >, itk::MeshFromSphericalFunctionTessellatedSamplesImageFilter< TInputImage, TOutputMesh >, itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >, itk::MeshFromSHCoefficientsImageFilter< TInputImage, TOutputMesh >, and itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >.
Definition at line 191 of file itkMeshFromImageImageFilter.h.
References PrintVar, and utl::PrintVector().
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Definition at line 113 of file itkMeshFromImageImageFilter.h.
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Definition at line 136 of file itkMeshFromImageImageFilter.h.
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Set/Get scale factor
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Definition at line 127 of file itkMeshFromImageImageFilter.h.
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Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TInputImage >.
Reimplemented in itk::MeshFromTensorImageFilter< TInputImage, TOutputMesh >, itk::MeshFromContinuousSphericalFunctionImageFilter< TInputImage, TOutputMesh >, and itk::MeshFromPeaksImageFilter< TInputImage, TOutputMesh >.
Definition at line 187 of file itkMeshFromImageImageFilter.h.
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3D box view (xmin, xmax, ymin, ymax, zmin, zmax)
Definition at line 243 of file itkMeshFromImageImageFilter.h.
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Definition at line 240 of file itkMeshFromImageImageFilter.h.
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flips in x/y/z-axis. 0 means no flip, 1 means flip
Definition at line 249 of file itkMeshFromImageImageFilter.h.
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Definition at line 236 of file itkMeshFromImageImageFilter.h.
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Definition at line 238 of file itkMeshFromImageImageFilter.h.
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slice view (x,y,z), 3 orthogonal slices
Definition at line 246 of file itkMeshFromImageImageFilter.h.
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Orienation dimension
Definition at line 66 of file itkMeshFromImageImageFilter.h.