DMRITool
v0.1.1-139-g860d86b4
Diffusion MRI Tool
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#include <itkMeshFromSphericalFunctionImageFilter.h>
Compute mesh from general spherical function.
Definition at line 35 of file itkMeshFromSphericalFunctionImageFilter.h.
Public Types | |
typedef SphereTessellatorType::BasicShapeType | BasicShapeType |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::IndexType | InputImageIndexType |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::PointType | InputImagePointType |
typedef InputImageType::RegionType | InputImageRegionType |
typedef InputImageType::SizeType | InputImageSizeType |
typedef InputImageType::SizeValueType | InputImageSizeValueType |
typedef InputImageType::SpacingType | InputImageSpacingType |
typedef TInputImage | InputImageType |
typedef Superclass::MatrixPointer | MatrixPointer |
typedef Superclass::MatrixType | MatrixType |
enum | NormalizationType { NONE =0, MIN_MAX, UNIT_MAX, UNIT_INTEGRAL } |
typedef Superclass::OutputMeshCellArrayType | OutputMeshCellArrayType |
typedef Superclass::OutputMeshPointsType | OutputMeshPointsType |
typedef Superclass::OutputMeshPolyDataPointer | OutputMeshPolyDataPointer |
typedef TOutputMesh | OutputMeshPolyDataType |
typedef Superclass::OutputMeshRGBType | OutputMeshRGBType |
typedef Superclass::OutputMeshScalarType | OutputMeshScalarType |
typedef SmartPointer< Self > | Pointer |
typedef MeshFromSphericalFunctionImageFilter | Self |
typedef SphereTessellatorType::Pointer | SphereTessellatorPointer |
typedef SphereTessellator< double > | SphereTessellatorType |
typedef Superclass::STDVectorPointer | STDVectorPointer |
typedef Superclass::STDVectorType | STDVectorType |
typedef MeshFromImageImageFilter< TInputImage, TOutputMesh > | Superclass |
typedef Superclass::VectorPointer | VectorPointer |
typedef Superclass::VectorType | VectorType |
Public Types inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh > | |
enum | ColorSchemeType { UNKNOWN =0, FIXED, DIRECTION, MAGNITUDE } |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::IndexType | InputImageIndexType |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::PointType | InputImagePointType |
typedef InputImageType::RegionType | InputImageRegionType |
typedef InputImageType::SizeType | InputImageSizeType |
typedef InputImageType::SizeValueType | InputImageSizeValueType |
typedef InputImageType::SpacingType | InputImageSpacingType |
typedef TInputImage | InputImageType |
typedef utl_shared_ptr< MatrixType > | MatrixPointer |
typedef utl::NDArray< double, 2 > | MatrixType |
typedef vtkCellArray | OutputMeshCellArrayType |
typedef vtkPoints | OutputMeshPointsType |
typedef vtkSmartPointer< OutputMeshPolyDataType > | OutputMeshPolyDataPointer |
typedef TOutputMesh | OutputMeshPolyDataType |
typedef vtkUnsignedCharArray | OutputMeshRGBType |
typedef vtkDoubleArray | OutputMeshScalarType |
typedef SmartPointer< Self > | Pointer |
typedef MeshFromImageImageFilter | Self |
typedef utl_shared_ptr< STDVectorType > | STDVectorPointer |
typedef std::vector< double > | STDVectorType |
typedef MaskedImageToImageFilter< TInputImage, TInputImage > | Superclass |
typedef utl_shared_ptr< VectorType > | VectorPointer |
typedef utl::NDArray< double, 1 > | VectorType |
Public Types inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
typedef SmartPointer< const Self > | ConstPointer |
typedef InputImageType::ConstPointer | InputImageConstPointer |
typedef InputImageType::IndexType | InputImageIndexType |
typedef InputImageType::PixelType | InputImagePixelType |
typedef InputImageType::Pointer | InputImagePointer |
typedef InputImageType::RegionType | InputImageRegionType |
typedef InputImageType::SizeType | InputImageSizeType |
typedef InputImageType::SpacingType | InputImageSpacingType |
typedef TInputImage | InputImageType |
typedef LoggerType::Pointer | LoggerPointer |
typedef ThreadLogger | LoggerType |
typedef utl_shared_ptr< LoggerVectorType > | LoggerVectorPointer |
typedef std::vector< LoggerPointer > | LoggerVectorType |
typedef MaskImageType::Pointer | MaskImagePointer |
typedef Image< double, 3 > | MaskImageType |
typedef OutputImageType::IndexType | OutputImageIndexType |
typedef OutputImageType::PixelType | OutputImagePixelType |
typedef OutputImageType::Pointer | OutputImagePointer |
typedef OutputImageType::RegionType | OutputImageRegionType |
typedef OutputImageType::SizeType | OutputImageSizeType |
typedef OutputImageType::SpacingType | OutputImageSpacingType |
typedef TInputImage | OutputImageType |
typedef SmartPointer< Self > | Pointer |
typedef MaskedImageToImageFilter | Self |
typedef ImageToImageFilter< TInputImage, TInputImage > | Superclass |
Public Member Functions | |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
virtual const char * | GetNameOfClass () const |
virtual NormalizationType | GetNormalization () |
unsigned int | GetNumberOfOrientations () const |
virtual MatrixPointer | GetOrientations () |
virtual double | GetPow () |
virtual bool | GetRemoveNegativeValues () |
virtual void | RemoveNegativeValuesOff () |
virtual void | RemoveNegativeValuesOn () |
virtual void | SetNormalization (NormalizationType _arg) |
virtual void | SetOrientations (MatrixPointer _arg) |
virtual void | SetPow (double _arg) |
virtual void | SetRemoveNegativeValues (bool _arg) |
Public Member Functions inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh > | |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
std::vector< int > | GetBoxView () const |
virtual ColorSchemeType | GetColorScheme () |
std::vector< int > | GetFlip () const |
OutputMeshPolyDataPointer | GetOutput () |
virtual double | GetScale () |
std::vector< int > | GetSliceView () const |
void | SetBoxView (const int x0, const int x1, const int y0, const int y1, const int z0, const int z1) |
virtual void | SetColorScheme (ColorSchemeType _arg) |
void | SetFlip (const int flipx, const int flipy, const int flipz) |
virtual void | SetScale (double _arg) |
void | SetSliceView (const int coronal, const int sagittal, const int transverse) |
Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
virtual const LoggerType * | GetLogger () const |
virtual const MaskImageType * | GetMaskImage () const |
bool | IsMaskUsed () |
itkGetObjectMacro (MaskImage, MaskImageType) | |
itkGetObjectMacro (Logger, LoggerType) | |
itkSetGetMacro (LogLevel, int) | |
virtual void | SetLogger (LoggerType *_arg) |
virtual void | SetMaskImage (MaskImageType *_arg) |
void | SetMaskImage (const std::string &file) |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh > | |
static Pointer | New () |
Static Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
static Pointer | New () |
Protected Attributes | |
NormalizationType | m_Normalization |
MatrixPointer | m_Orientations |
double | m_Pow |
bool | m_RemoveNegativeValues |
Protected Attributes inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh > | |
std::vector< int > | m_BoxView = std::vector<int>(6,-1) |
ColorSchemeType | m_ColorScheme =UNKNOWN |
std::vector< int > | m_Flip = std::vector<int>(3, 0) |
OutputMeshPolyDataPointer | m_Mesh = OutputMeshPolyDataType::New() |
double | m_Scale =1.0 |
std::vector< int > | m_SliceView = std::vector<int>(3,-1) |
Protected Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
LoggerPointer | m_Logger |
LoggerVectorPointer | m_LoggerVector |
int | m_LogLevel |
MaskImagePointer | m_MaskImage |
int | m_ThreadID |
Private Member Functions | |
MeshFromSphericalFunctionImageFilter (const Self &) | |
void | operator= (const Self &) |
Additional Inherited Members | |
Static Public Attributes inherited from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh > | |
static const unsigned int | OrientationDimension = 3 |
Static Public Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TInputImage > | |
static const unsigned int | InputImageDimension |
static const unsigned int | OutputImageDimension |
typedef SphereTessellatorType::BasicShapeType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::BasicShapeType |
Definition at line 75 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef SmartPointer<const Self> itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::ConstPointer |
Definition at line 43 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef InputImageType::ConstPointer itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImageConstPointer |
Definition at line 54 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef InputImageType::IndexType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImageIndexType |
Definition at line 55 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef InputImageType::PixelType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImagePixelType |
Definition at line 59 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef InputImageType::Pointer itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImagePointer |
Definition at line 53 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef InputImageType::PointType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImagePointType |
Definition at line 61 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef InputImageType::RegionType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImageRegionType |
Definition at line 60 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef InputImageType::SizeType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImageSizeType |
Definition at line 56 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef InputImageType::SizeValueType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImageSizeValueType |
Definition at line 57 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef InputImageType::SpacingType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImageSpacingType |
Definition at line 58 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef TInputImage itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::InputImageType |
Definition at line 49 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::MatrixPointer itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::MatrixPointer |
Definition at line 79 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::MatrixType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::MatrixType |
Orientation Matrices
Definition at line 78 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::OutputMeshCellArrayType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::OutputMeshCellArrayType |
Definition at line 66 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::OutputMeshPointsType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::OutputMeshPointsType |
Definition at line 65 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::OutputMeshPolyDataPointer itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::OutputMeshPolyDataPointer |
Definition at line 67 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef TOutputMesh itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::OutputMeshPolyDataType |
Definition at line 63 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::OutputMeshRGBType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::OutputMeshRGBType |
Definition at line 69 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::OutputMeshScalarType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::OutputMeshScalarType |
Definition at line 68 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef SmartPointer<Self> itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::Pointer |
Definition at line 42 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef MeshFromSphericalFunctionImageFilter itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::Self |
Standard class typedefs.
Definition at line 40 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef SphereTessellatorType::Pointer itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::SphereTessellatorPointer |
Definition at line 74 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef SphereTessellator<double> itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::SphereTessellatorType |
Set/Get the min-max normalization
Definition at line 73 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::STDVectorPointer itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::STDVectorPointer |
Definition at line 83 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::STDVectorType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::STDVectorType |
Definition at line 82 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef MeshFromImageImageFilter<TInputImage, TOutputMesh> itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::Superclass |
Definition at line 41 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::VectorPointer itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::VectorPointer |
Definition at line 81 of file itkMeshFromSphericalFunctionImageFilter.h.
typedef Superclass::VectorType itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::VectorType |
Definition at line 80 of file itkMeshFromSphericalFunctionImageFilter.h.
enum itk::MeshFromSphericalFunctionImageFilter::NormalizationType |
Normalization type
Enumerator | |
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NONE | |
MIN_MAX | |
UNIT_MAX | |
UNIT_INTEGRAL |
Definition at line 86 of file itkMeshFromSphericalFunctionImageFilter.h.
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Definition at line 110 of file itkMeshFromSphericalFunctionImageFilter.h.
References spams::FISTA::NONE.
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Definition at line 121 of file itkMeshFromSphericalFunctionImageFilter.h.
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virtual::itk::LightObject::Pointer itk::MeshFromSphericalFunctionImageFilter< TInputImage, TOutputMesh >::CreateAnother | ( | void | ) | const |
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Run-time type information (and related methods)
Reimplemented from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >.
Reimplemented in itk::MeshFromContinuousSphericalFunctionImageFilter< TInputImage, TOutputMesh >, itk::MeshFromDiscreteFiberODFImageFilter< TInputImage, TOutputMesh >, itk::MeshFromSphericalFunctionTessellatedSamplesImageFilter< TInputImage, TOutputMesh >, and itk::MeshFromSHCoefficientsImageFilter< TInputImage, TOutputMesh >.
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Definition at line 103 of file itkMeshFromSphericalFunctionImageFilter.h.
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Definition at line 131 of file itkMeshFromSphericalFunctionImageFilter.h.
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Method for creation through the object factory.
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Reimplemented from itk::MeshFromImageImageFilter< TInputImage, TOutputMesh >.
Reimplemented in itk::MeshFromSphericalFunctionTessellatedSamplesImageFilter< TInputImage, TOutputMesh >.
Definition at line 124 of file itkMeshFromSphericalFunctionImageFilter.h.
References spams::FISTA::NONE, PrintEnum4, utl::PrintUtlMatrix(), and PrintVar.
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Set/Get whether and how to do normalization
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Set/Get pow factor
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Set/Get whether to remove negative values
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Definition at line 159 of file itkMeshFromSphericalFunctionImageFilter.h.
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Definition at line 157 of file itkMeshFromSphericalFunctionImageFilter.h.
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Definition at line 155 of file itkMeshFromSphericalFunctionImageFilter.h.
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Definition at line 153 of file itkMeshFromSphericalFunctionImageFilter.h.