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itk::BasisMatrixGenerator< TElement > Class Template Reference
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#include <itkBasisMatrixGenerator.h>

+ Inheritance diagram for itk::BasisMatrixGenerator< TElement >:
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Detailed Description

template<typename TElement = double>
class itk::BasisMatrixGenerator< TElement >

Generate basis matrix.

Author
Jian Cheng (jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om)

Definition at line 40 of file itkBasisMatrixGenerator.h.

Public Types

typedef SmartPointer< const Self > ConstPointer
 
typedef utl_shared_ptr< MatrixType > MatrixPointer
 
typedef utl::NDArray< double, 2 > MatrixType
 
enum  OutputType {
  DWI =0,
  EAP,
  ODF
}
 
typedef SmartPointer< Self > Pointer
 
typedef SamplingSchemeQSpaceType::Pointer SamplingSchemeQSpacePointer
 
typedef SamplingSchemeQSpace< double > SamplingSchemeQSpaceType
 
typedef SamplingSchemeRSpaceType::Pointer SamplingSchemeRSpacePointer
 
typedef SamplingScheme3D< double > SamplingSchemeRSpaceType
 
typedef BasisMatrixGenerator Self
 
typedef utl_shared_ptr< STDVectorType > STDVectorPointer
 
typedef std::vector< double > STDVectorType
 
typedef Object Superclass
 
typedef utl_shared_ptr< VectorType > VectorPointer
 
typedef utl::NDArray< double, 1 > VectorType
 

Public Member Functions

virtual void ComputeBasisMatrix ()
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual void Flip (const int flipx, const int flipy, const int flipz)
 
virtual MatrixPointer GetBasisMatrix () const
 
virtual double GetMD0 ()
 
virtual const char * GetNameOfClass () const
 
virtual int GetNumberOfBasis () const
 
virtual int GetNumberOfSamples () const
 
virtual int GetODFOrder ()
 
virtual OutputType GetOutputType ()
 
virtual MatrixPointer GetQBasisMatrixForDWI ()
 
virtual MatrixPointer GetRBasisMatrixForEAP ()
 
virtual MatrixPointer GetRBasisMatrixForODF ()
 
 itkGetObjectMacro (SamplingSchemeQSpace, SamplingSchemeQSpaceType)
 
 itkGetObjectMacro (SamplingSchemeRSpace, SamplingSchemeRSpaceType)
 
virtual void SetMD0 (double _arg)
 
virtual void SetODFOrder (int _arg)
 
virtual void SetOutputType (OutputType _arg)
 
virtual void SetSamplingSchemeQSpace (SamplingSchemeQSpaceType *_arg)
 
virtual void SetSamplingSchemeRSpace (SamplingSchemeRSpaceType *_arg)
 

Static Public Member Functions

static Pointer New ()
 

Protected Member Functions

 BasisMatrixGenerator ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
void PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
 
virtual void VerifyInputParameters () const
 
virtual ~BasisMatrixGenerator ()
 

Protected Attributes

double m_MD0
 
int m_ODFOrder
 
OutputType m_OutputType
 
MatrixPointer m_QBasisMatrixForDWI
 
MatrixPointer m_RBasisMatrixForEAP
 
MatrixPointer m_RBasisMatrixForODF
 
SamplingSchemeQSpacePointer m_SamplingSchemeQSpace
 
SamplingSchemeRSpacePointer m_SamplingSchemeRSpace
 

Private Member Functions

 BasisMatrixGenerator (const Self &)
 
void operator= (const Self &)
 

Member Typedef Documentation

template<typename TElement = double>
typedef SmartPointer<const Self> itk::BasisMatrixGenerator< TElement >::ConstPointer

Definition at line 47 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef utl_shared_ptr<MatrixType> itk::BasisMatrixGenerator< TElement >::MatrixPointer

Definition at line 58 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef utl::NDArray<double,2> itk::BasisMatrixGenerator< TElement >::MatrixType

Save the template parameters.

Definition at line 53 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef SmartPointer<Self> itk::BasisMatrixGenerator< TElement >::Pointer

Definition at line 46 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef SamplingSchemeQSpaceType::Pointer itk::BasisMatrixGenerator< TElement >::SamplingSchemeQSpacePointer

Definition at line 64 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef SamplingSchemeQSpace<double> itk::BasisMatrixGenerator< TElement >::SamplingSchemeQSpaceType

Definition at line 63 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef SamplingSchemeRSpaceType::Pointer itk::BasisMatrixGenerator< TElement >::SamplingSchemeRSpacePointer

Definition at line 67 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef SamplingScheme3D<double> itk::BasisMatrixGenerator< TElement >::SamplingSchemeRSpaceType

Definition at line 66 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef BasisMatrixGenerator itk::BasisMatrixGenerator< TElement >::Self

Standard class typedefs.

Definition at line 44 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef utl_shared_ptr<STDVectorType > itk::BasisMatrixGenerator< TElement >::STDVectorPointer

Definition at line 61 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef std::vector<double> itk::BasisMatrixGenerator< TElement >::STDVectorType

Definition at line 60 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef Object itk::BasisMatrixGenerator< TElement >::Superclass

Definition at line 45 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef utl_shared_ptr<VectorType> itk::BasisMatrixGenerator< TElement >::VectorPointer

Definition at line 59 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
typedef utl::NDArray<double,1> itk::BasisMatrixGenerator< TElement >::VectorType

Definition at line 57 of file itkBasisMatrixGenerator.h.

Member Enumeration Documentation

template<typename TElement = double>
enum itk::BasisMatrixGenerator::OutputType
Enumerator
DWI 
EAP 
ODF 

Definition at line 75 of file itkBasisMatrixGenerator.h.

Constructor & Destructor Documentation

template<typename TElement >
itk::BasisMatrixGenerator< TElement >::BasisMatrixGenerator ( )
protected

Definition at line 28 of file itkBasisMatrixGenerator.hxx.

References itk::BasisMatrixGenerator< TElement >::InternalClone().

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template<typename TElement = double>
virtual itk::BasisMatrixGenerator< TElement >::~BasisMatrixGenerator ( )
inlineprotectedvirtual

Definition at line 138 of file itkBasisMatrixGenerator.h.

References ITK_OVERRIDE.

template<typename TElement = double>
itk::BasisMatrixGenerator< TElement >::BasisMatrixGenerator ( const Self &  )
private

Member Function Documentation

template<typename TElement = double>
virtual void itk::BasisMatrixGenerator< TElement >::ComputeBasisMatrix ( )
inlinevirtual

Reimplemented in itk::TensorBasisMatrixGenerator< TElement >.

Definition at line 98 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
virtual::itk::LightObject::Pointer itk::BasisMatrixGenerator< TElement >::CreateAnother ( void  ) const
template<typename TElement = double>
virtual void itk::BasisMatrixGenerator< TElement >::Flip ( const int  flipx,
const int  flipy,
const int  flipz 
)
inlinevirtual

Reimplemented in itk::DiscreteBasisMatrixGenerator< TElement >.

Definition at line 102 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
virtual MatrixPointer itk::BasisMatrixGenerator< TElement >::GetBasisMatrix ( ) const
inlinevirtual

Definition at line 124 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
virtual double itk::BasisMatrixGenerator< TElement >::GetMD0 ( )
virtual
template<typename TElement = double>
virtual const char* itk::BasisMatrixGenerator< TElement >::GetNameOfClass ( ) const
virtual

Standard part of every itk Object.

Reimplemented in itk::TensorBasisMatrixGenerator< TElement >, and itk::DiscreteBasisMatrixGenerator< TElement >.

template<typename TElement = double>
virtual int itk::BasisMatrixGenerator< TElement >::GetNumberOfBasis ( ) const
inlinevirtual

Reimplemented in itk::DiscreteBasisMatrixGenerator< TElement >.

Definition at line 120 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
virtual int itk::BasisMatrixGenerator< TElement >::GetNumberOfSamples ( ) const
inlinevirtual

Definition at line 116 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
virtual int itk::BasisMatrixGenerator< TElement >::GetODFOrder ( )
virtual
template<typename TElement = double>
virtual OutputType itk::BasisMatrixGenerator< TElement >::GetOutputType ( )
virtual
template<typename TElement = double>
virtual MatrixPointer itk::BasisMatrixGenerator< TElement >::GetQBasisMatrixForDWI ( )
virtual
template<typename TElement = double>
virtual MatrixPointer itk::BasisMatrixGenerator< TElement >::GetRBasisMatrixForEAP ( )
virtual
template<typename TElement = double>
virtual MatrixPointer itk::BasisMatrixGenerator< TElement >::GetRBasisMatrixForODF ( )
virtual
template<typename TElement >
LightObject::Pointer itk::BasisMatrixGenerator< TElement >::InternalClone ( ) const
protected

Definition at line 44 of file itkBasisMatrixGenerator.hxx.

References itk::BasisMatrixGenerator< TElement >::PrintSelf(), and utlShowPosition.

Referenced by itk::BasisMatrixGenerator< TElement >::BasisMatrixGenerator().

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template<typename TElement = double>
itk::BasisMatrixGenerator< TElement >::itkGetObjectMacro ( SamplingSchemeQSpace  ,
SamplingSchemeQSpaceType   
)
template<typename TElement = double>
itk::BasisMatrixGenerator< TElement >::itkGetObjectMacro ( SamplingSchemeRSpace  ,
SamplingSchemeRSpaceType   
)
template<typename TElement = double>
static Pointer itk::BasisMatrixGenerator< TElement >::New ( )
static

Method for creation through the object factory.

template<typename TElement = double>
void itk::BasisMatrixGenerator< TElement >::operator= ( const Self &  )
private
template<typename TElement >
void itk::BasisMatrixGenerator< TElement >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protected

Definition at line 73 of file itkBasisMatrixGenerator.hxx.

References PrintEnum3, utl::PrintUtlMatrix(), PrintVar2, and itk::BasisMatrixGenerator< TElement >::VerifyInputParameters().

Referenced by itk::BasisMatrixGenerator< TElement >::InternalClone().

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template<typename TElement = double>
virtual void itk::BasisMatrixGenerator< TElement >::SetMD0 ( double  _arg)
virtual
template<typename TElement = double>
virtual void itk::BasisMatrixGenerator< TElement >::SetODFOrder ( int  _arg)
virtual
template<typename TElement = double>
virtual void itk::BasisMatrixGenerator< TElement >::SetOutputType ( OutputType  _arg)
virtual
template<typename TElement = double>
virtual void itk::BasisMatrixGenerator< TElement >::SetSamplingSchemeQSpace ( SamplingSchemeQSpaceType *  _arg)
virtual
template<typename TElement = double>
virtual void itk::BasisMatrixGenerator< TElement >::SetSamplingSchemeRSpace ( SamplingSchemeRSpaceType *  _arg)
virtual
template<typename TElement >
void itk::BasisMatrixGenerator< TElement >::VerifyInputParameters ( ) const
protectedvirtual

Reimplemented in itk::DiscreteBasisMatrixGenerator< TElement >, and itk::TensorBasisMatrixGenerator< TElement >.

Definition at line 90 of file itkBasisMatrixGenerator.hxx.

References utlGlobalException, and utlSAGlobalException.

Referenced by itk::BasisMatrixGenerator< TElement >::PrintSelf().

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Member Data Documentation

template<typename TElement = double>
double itk::BasisMatrixGenerator< TElement >::m_MD0
protected

typical MD value for typical scale

Definition at line 158 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
int itk::BasisMatrixGenerator< TElement >::m_ODFOrder
protected

for ODF

Definition at line 161 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
OutputType itk::BasisMatrixGenerator< TElement >::m_OutputType
protected

Definition at line 163 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
MatrixPointer itk::BasisMatrixGenerator< TElement >::m_QBasisMatrixForDWI
protected

Definition at line 152 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
MatrixPointer itk::BasisMatrixGenerator< TElement >::m_RBasisMatrixForEAP
protected

Definition at line 154 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
MatrixPointer itk::BasisMatrixGenerator< TElement >::m_RBasisMatrixForODF
protected

Definition at line 155 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
SamplingSchemeQSpacePointer itk::BasisMatrixGenerator< TElement >::m_SamplingSchemeQSpace
protected

Sampling Scheme in q-space

Definition at line 147 of file itkBasisMatrixGenerator.h.

template<typename TElement = double>
SamplingSchemeRSpacePointer itk::BasisMatrixGenerator< TElement >::m_SamplingSchemeRSpace
protected

Sampling Scheme in r-space

Definition at line 150 of file itkBasisMatrixGenerator.h.

The documentation for this class was generated from the following files:
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