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itk::TensorBasisMatrixGenerator< TElement > Class Template Reference
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#include <itkTensorBasisMatrixGenerator.h>

+ Inheritance diagram for itk::TensorBasisMatrixGenerator< TElement >:
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Detailed Description

template<typename TElement = double>
class itk::TensorBasisMatrixGenerator< TElement >

Generate basis matrix.

Author
Jian Cheng (jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om)

Definition at line 36 of file itkTensorBasisMatrixGenerator.h.

Public Types

typedef SmartPointer< const Self > ConstPointer
 
typedef Superclass::MatrixPointer MatrixPointer
 
typedef Superclass::MatrixType MatrixType
 
typedef SmartPointer< Self > Pointer
 
typedef TensorBasisMatrixGenerator Self
 
typedef Superclass::STDVectorPointer STDVectorPointer
 
typedef Superclass::STDVectorType STDVectorType
 
typedef DiscreteBasisMatrixGenerator< TElement > Superclass
 
typedef DiffusionTensor< double > TensorType
 
typedef Superclass::VectorPointer VectorPointer
 
typedef Superclass::VectorType VectorType
 
- Public Types inherited from itk::DiscreteBasisMatrixGenerator< TElement >
typedef SmartPointer< const Self > ConstPointer
 
typedef Superclass::MatrixPointer MatrixPointer
 
typedef Superclass::MatrixType MatrixType
 
typedef SmartPointer< Self > Pointer
 
typedef DiscreteBasisMatrixGenerator Self
 
typedef Superclass::STDVectorPointer STDVectorPointer
 
typedef Superclass::STDVectorType STDVectorType
 
typedef BasisMatrixGenerator< TElement > Superclass
 
typedef Superclass::VectorPointer VectorPointer
 
typedef Superclass::VectorType VectorType
 
- Public Types inherited from itk::BasisMatrixGenerator< TElement >
typedef SmartPointer< const Self > ConstPointer
 
typedef utl_shared_ptr< MatrixType > MatrixPointer
 
typedef utl::NDArray< double, 2 > MatrixType
 
enum  OutputType {
  DWI =0,
  EAP,
  ODF
}
 
typedef SmartPointer< Self > Pointer
 
typedef SamplingSchemeQSpaceType::Pointer SamplingSchemeQSpacePointer
 
typedef SamplingSchemeQSpace< double > SamplingSchemeQSpaceType
 
typedef SamplingSchemeRSpaceType::Pointer SamplingSchemeRSpacePointer
 
typedef SamplingScheme3D< double > SamplingSchemeRSpaceType
 
typedef BasisMatrixGenerator Self
 
typedef utl_shared_ptr< STDVectorType > STDVectorPointer
 
typedef std::vector< double > STDVectorType
 
typedef Object Superclass
 
typedef utl_shared_ptr< VectorType > VectorPointer
 
typedef utl::NDArray< double, 1 > VectorType
 

Public Member Functions

void ComputeBasisMatrix () ITK_OVERRIDE
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual double GetEigenValue1 ()
 
virtual double GetEigenValue2 ()
 
virtual double GetEigenValue3 ()
 
virtual double GetEigenValueISO ()
 
virtual const char * GetNameOfClass () const
 
virtual void SetEigenValue1 (double _arg)
 
virtual void SetEigenValue2 (double _arg)
 
virtual void SetEigenValue3 (double _arg)
 
virtual void SetEigenValueISO (double _arg)
 
- Public Member Functions inherited from itk::DiscreteBasisMatrixGenerator< TElement >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
void Flip (const int flipx, const int flipy, const int flipz) override
 
virtual MatrixPointer GetBasisOrientations ()
 
int GetNumberOfBasis () const override
 
virtual bool GetUseIsotropicTerm ()
 
virtual void SetBasisOrientations (MatrixPointer _arg)
 
virtual void SetUseIsotropicTerm (bool _arg)
 
virtual void UseIsotropicTermOff ()
 
virtual void UseIsotropicTermOn ()
 
- Public Member Functions inherited from itk::BasisMatrixGenerator< TElement >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual MatrixPointer GetBasisMatrix () const
 
virtual double GetMD0 ()
 
virtual int GetNumberOfSamples () const
 
virtual int GetODFOrder ()
 
virtual OutputType GetOutputType ()
 
virtual MatrixPointer GetQBasisMatrixForDWI ()
 
virtual MatrixPointer GetRBasisMatrixForEAP ()
 
virtual MatrixPointer GetRBasisMatrixForODF ()
 
 itkGetObjectMacro (SamplingSchemeQSpace, SamplingSchemeQSpaceType)
 
 itkGetObjectMacro (SamplingSchemeRSpace, SamplingSchemeRSpaceType)
 
virtual void SetMD0 (double _arg)
 
virtual void SetODFOrder (int _arg)
 
virtual void SetOutputType (OutputType _arg)
 
virtual void SetSamplingSchemeQSpace (SamplingSchemeQSpaceType *_arg)
 
virtual void SetSamplingSchemeRSpace (SamplingSchemeRSpaceType *_arg)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::DiscreteBasisMatrixGenerator< TElement >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::BasisMatrixGenerator< TElement >
static Pointer New ()
 

Protected Member Functions

LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
void PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
 
 TensorBasisMatrixGenerator ()
 
virtual void VerifyInputParameters () const ITK_OVERRIDE
 
virtual ~TensorBasisMatrixGenerator ()
 
- Protected Member Functions inherited from itk::DiscreteBasisMatrixGenerator< TElement >
 DiscreteBasisMatrixGenerator ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
void PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
 
virtual ~DiscreteBasisMatrixGenerator ()
 
- Protected Member Functions inherited from itk::BasisMatrixGenerator< TElement >
 BasisMatrixGenerator ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
void PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
 
virtual ~BasisMatrixGenerator ()
 

Protected Attributes

double m_EigenValue1
 
double m_EigenValue2
 
double m_EigenValue3
 
double m_EigenValueISO
 
- Protected Attributes inherited from itk::DiscreteBasisMatrixGenerator< TElement >
MatrixPointer m_BasisOrientations
 
bool m_UseIsotropicTerm
 
- Protected Attributes inherited from itk::BasisMatrixGenerator< TElement >
double m_MD0
 
int m_ODFOrder
 
OutputType m_OutputType
 
MatrixPointer m_QBasisMatrixForDWI
 
MatrixPointer m_RBasisMatrixForEAP
 
MatrixPointer m_RBasisMatrixForODF
 
SamplingSchemeQSpacePointer m_SamplingSchemeQSpace
 
SamplingSchemeRSpacePointer m_SamplingSchemeRSpace
 

Private Member Functions

void operator= (const Self &)
 
 TensorBasisMatrixGenerator (const Self &)
 

Member Typedef Documentation

template<typename TElement = double>
typedef SmartPointer<const Self> itk::TensorBasisMatrixGenerator< TElement >::ConstPointer

Definition at line 44 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef Superclass::MatrixPointer itk::TensorBasisMatrixGenerator< TElement >::MatrixPointer

Definition at line 55 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef Superclass::MatrixType itk::TensorBasisMatrixGenerator< TElement >::MatrixType

Save the template parameters.

Definition at line 50 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef SmartPointer<Self> itk::TensorBasisMatrixGenerator< TElement >::Pointer

Definition at line 43 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef TensorBasisMatrixGenerator itk::TensorBasisMatrixGenerator< TElement >::Self

Standard class typedefs.

Definition at line 41 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef Superclass::STDVectorPointer itk::TensorBasisMatrixGenerator< TElement >::STDVectorPointer

Definition at line 58 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef Superclass::STDVectorType itk::TensorBasisMatrixGenerator< TElement >::STDVectorType

Definition at line 57 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef DiscreteBasisMatrixGenerator<TElement> itk::TensorBasisMatrixGenerator< TElement >::Superclass

Definition at line 42 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef DiffusionTensor<double> itk::TensorBasisMatrixGenerator< TElement >::TensorType

Definition at line 60 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef Superclass::VectorPointer itk::TensorBasisMatrixGenerator< TElement >::VectorPointer

Definition at line 56 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
typedef Superclass::VectorType itk::TensorBasisMatrixGenerator< TElement >::VectorType

Definition at line 54 of file itkTensorBasisMatrixGenerator.h.

Constructor & Destructor Documentation

template<typename TElement >
itk::TensorBasisMatrixGenerator< TElement >::TensorBasisMatrixGenerator ( )
protected

Definition at line 29 of file itkTensorBasisMatrixGenerator.hxx.

References itk::TensorBasisMatrixGenerator< TElement >::InternalClone().

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template<typename TElement = double>
virtual itk::TensorBasisMatrixGenerator< TElement >::~TensorBasisMatrixGenerator ( )
inlineprotectedvirtual

Definition at line 84 of file itkTensorBasisMatrixGenerator.h.

References ITK_OVERRIDE.

template<typename TElement = double>
itk::TensorBasisMatrixGenerator< TElement >::TensorBasisMatrixGenerator ( const Self &  )
private

Member Function Documentation

template<typename TElement >
void itk::TensorBasisMatrixGenerator< TElement >::ComputeBasisMatrix ( )
virtual

Reimplemented from itk::BasisMatrixGenerator< TElement >.

Definition at line 84 of file itkTensorBasisMatrixGenerator.hxx.

References itk::DiffusionTensor< TPrecision >::GetDWISamples(), itk::DiffusionTensor< TPrecision >::GetEAPSamples(), itk::DiffusionTensor< TPrecision >::GetODFSamples(), itk::DiffusionTensor< TPrecision >::Rotate(), itk::DiffusionTensor< TPrecision >::SetEigenValues(), and utlShowPosition.

Referenced by itk::TensorBasisMatrixGenerator< TElement >::VerifyInputParameters().

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template<typename TElement = double>
virtual::itk::LightObject::Pointer itk::TensorBasisMatrixGenerator< TElement >::CreateAnother ( void  ) const
template<typename TElement = double>
virtual double itk::TensorBasisMatrixGenerator< TElement >::GetEigenValue1 ( )
virtual
template<typename TElement = double>
virtual double itk::TensorBasisMatrixGenerator< TElement >::GetEigenValue2 ( )
virtual
template<typename TElement = double>
virtual double itk::TensorBasisMatrixGenerator< TElement >::GetEigenValue3 ( )
virtual
template<typename TElement = double>
virtual double itk::TensorBasisMatrixGenerator< TElement >::GetEigenValueISO ( )
virtual
template<typename TElement = double>
virtual const char* itk::TensorBasisMatrixGenerator< TElement >::GetNameOfClass ( ) const
virtual

Standard part of every itk Object.

Reimplemented from itk::DiscreteBasisMatrixGenerator< TElement >.

template<typename TElement >
LightObject::Pointer itk::TensorBasisMatrixGenerator< TElement >::InternalClone ( ) const
protected

Definition at line 40 of file itkTensorBasisMatrixGenerator.hxx.

References itk::TensorBasisMatrixGenerator< TElement >::PrintSelf(), and utlShowPosition.

Referenced by itk::TensorBasisMatrixGenerator< TElement >::TensorBasisMatrixGenerator().

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template<typename TElement = double>
static Pointer itk::TensorBasisMatrixGenerator< TElement >::New ( )
static

Method for creation through the object factory.

template<typename TElement = double>
void itk::TensorBasisMatrixGenerator< TElement >::operator= ( const Self &  )
private
template<typename TElement >
void itk::TensorBasisMatrixGenerator< TElement >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protected

Definition at line 60 of file itkTensorBasisMatrixGenerator.hxx.

References PrintVar1, PrintVar3, and itk::TensorBasisMatrixGenerator< TElement >::VerifyInputParameters().

Referenced by itk::TensorBasisMatrixGenerator< TElement >::InternalClone().

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template<typename TElement = double>
virtual void itk::TensorBasisMatrixGenerator< TElement >::SetEigenValue1 ( double  _arg)
virtual

tensor parameters

template<typename TElement = double>
virtual void itk::TensorBasisMatrixGenerator< TElement >::SetEigenValue2 ( double  _arg)
virtual
template<typename TElement = double>
virtual void itk::TensorBasisMatrixGenerator< TElement >::SetEigenValue3 ( double  _arg)
virtual
template<typename TElement = double>
virtual void itk::TensorBasisMatrixGenerator< TElement >::SetEigenValueISO ( double  _arg)
virtual
template<typename TElement >
void itk::TensorBasisMatrixGenerator< TElement >::VerifyInputParameters ( ) const
protectedvirtual

Reimplemented from itk::DiscreteBasisMatrixGenerator< TElement >.

Definition at line 70 of file itkTensorBasisMatrixGenerator.hxx.

References itk::TensorBasisMatrixGenerator< TElement >::ComputeBasisMatrix(), utlGlobalException, and utlSAGlobalException.

Referenced by itk::TensorBasisMatrixGenerator< TElement >::PrintSelf().

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Member Data Documentation

template<typename TElement = double>
double itk::TensorBasisMatrixGenerator< TElement >::m_EigenValue1
protected

Definition at line 92 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
double itk::TensorBasisMatrixGenerator< TElement >::m_EigenValue2
protected

Definition at line 93 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
double itk::TensorBasisMatrixGenerator< TElement >::m_EigenValue3
protected

Definition at line 94 of file itkTensorBasisMatrixGenerator.h.

template<typename TElement = double>
double itk::TensorBasisMatrixGenerator< TElement >::m_EigenValueISO
protected

Definition at line 96 of file itkTensorBasisMatrixGenerator.h.

The documentation for this class was generated from the following files:
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