itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage > Class Template Reference

#include <itkDiffusionModelEstimationImageFilter.h>

Inheritance diagram for itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >

base filter for estimation of diffusion models

Author

Jian Cheng (JC), jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om

Definition at line 42 of file itkDiffusionModelEstimationImageFilter.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef utl_shared_ptr< MatrixType >	MatrixPointer
typedef utl::NDArray< double, 2 >	MatrixType
typedef SmartPointer< Self >	Pointer
typedef SamplingSchemeQSpaceType::Pointer	SamplingSchemeQSpacePointer
typedef SamplingSchemeQSpace< double >	SamplingSchemeQSpaceType
typedef SamplingSchemeRSpaceType::Pointer	SamplingSchemeRSpacePointer
typedef SamplingScheme3D< double >	SamplingSchemeRSpaceType
typedef DiffusionModelEstimationImageFilter	Self
typedef utl_shared_ptr< STDVectorType >	STDVectorPointer
typedef std::vector< double >	STDVectorType
typedef MaskedImageToImageFilter< TInputImage, TOutputImage >	Superclass
typedef utl_shared_ptr< VectorType >	VectorPointer
typedef utl::NDArray< double, 1 >	VectorType
Public Types inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::IndexType	InputImageIndexType
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef InputImageType::SizeType	InputImageSizeType
typedef InputImageType::SpacingType	InputImageSpacingType
typedef TInputImage	InputImageType
typedef LoggerType::Pointer	LoggerPointer
typedef ThreadLogger	LoggerType
typedef utl_shared_ptr< LoggerVectorType >	LoggerVectorPointer
typedef std::vector< LoggerPointer >	LoggerVectorType
typedef MaskImageType::Pointer	MaskImagePointer
typedef Image< double, 3 >	MaskImageType
typedef OutputImageType::IndexType	OutputImageIndexType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef OutputImageType::SizeType	OutputImageSizeType
typedef OutputImageType::SpacingType	OutputImageSpacingType
typedef TOutputImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef MaskedImageToImageFilter	Self
typedef ImageToImageFilter< TInputImage, TOutputImage >	Superclass

Public Member Functions
virtual void	ComputeBasisMatrix ()
virtual void	ComputeRegularizationWeight ()
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual MatrixPointer	GetBasisMatrix ()
virtual double	GetMD0 ()
virtual const char *	GetNameOfClass () const
	itkGetObjectMacro (SamplingSchemeQSpace, SamplingSchemeQSpaceType)
	itkTypedefMaskedImageToImageMacro (Superclass)
virtual void	SetMD0 (double _arg)
virtual void	SetSamplingSchemeQSpace (SamplingSchemeQSpaceType *_arg)
Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const LoggerType *	GetLogger () const
virtual const MaskImageType *	GetMaskImage () const
bool	IsMaskUsed ()
	itkGetObjectMacro (MaskImage, MaskImageType)
	itkGetObjectMacro (Logger, LoggerType)
	itkSetGetMacro (LogLevel, int)
virtual void	SetLogger (LoggerType *_arg)
virtual void	SetMaskImage (MaskImageType *_arg)
void	SetMaskImage (const std::string &file)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static Pointer	New ()

Protected Member Functions
	DiffusionModelEstimationImageFilter ()
LightObject::Pointer	InternalClone () const ITK_OVERRIDE
void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
virtual void	VerifyInputParameters () const
virtual	~DiffusionModelEstimationImageFilter ()
Protected Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
void	CreateLoggerVector ()
virtual void	InitializeThreadedLibraries ()
LightObject::Pointer	InternalClone () const ITK_OVERRIDE
	MaskedImageToImageFilter ()
std::string	ThreadIDToString () const
virtual void	VerifyMaskInformation () const
void	WriteLogger (const std::string &str, const LoggerBase::PriorityLevelType level=LoggerBase::DEBUG) const
virtual	~MaskedImageToImageFilter ()

Protected Attributes
MatrixPointer	m_BasisMatrix
double	m_MD0
VectorPointer	m_RegularizationWeight
SamplingSchemeQSpacePointer	m_SamplingSchemeQSpace
Protected Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
LoggerPointer	m_Logger
LoggerVectorPointer	m_LoggerVector
int	m_LogLevel
MaskImagePointer	m_MaskImage
int	m_ThreadID

Private Member Functions
	DiffusionModelEstimationImageFilter (const Self &)
void	operator= (const Self &)

Additional Inherited Members
Static Public Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension
static const unsigned int	OutputImageDimension

Member Typedef Documentation

template<class TInputImage , class TOutputImage >

typedef SmartPointer<const Self> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 50 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef utl_shared_ptr<MatrixType> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::MatrixPointer

Definition at line 63 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef utl::NDArray<double,2> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::MatrixType

Definition at line 61 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SmartPointer<Self> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::Pointer

Definition at line 49 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SamplingSchemeQSpaceType::Pointer itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::SamplingSchemeQSpacePointer

Definition at line 69 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SamplingSchemeQSpace<double> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::SamplingSchemeQSpaceType

Definition at line 68 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SamplingSchemeRSpaceType::Pointer itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::SamplingSchemeRSpacePointer

Definition at line 72 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SamplingScheme3D<double> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::SamplingSchemeRSpaceType

Definition at line 71 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef DiffusionModelEstimationImageFilter itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 47 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef utl_shared_ptr<STDVectorType > itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::STDVectorPointer

Definition at line 66 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef std::vector<double> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::STDVectorType

Definition at line 65 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef MaskedImageToImageFilter<TInputImage,TOutputImage> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::Superclass

Definition at line 48 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef utl_shared_ptr<VectorType> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::VectorPointer

Definition at line 64 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef utl::NDArray<double,1> itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::VectorType

Definition at line 62 of file itkDiffusionModelEstimationImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >

itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::DiffusionModelEstimationImageFilter ( )

protected

Definition at line 29 of file itkDiffusionModelEstimationImageFilter.hxx.

References itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::InternalClone().

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template<class TInputImage , class TOutputImage >

virtual itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::~DiffusionModelEstimationImageFilter ( )

inlineprotectedvirtual

Definition at line 93 of file itkDiffusionModelEstimationImageFilter.h.

References ITK_OVERRIDE.

template<class TInputImage , class TOutputImage >

itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::DiffusionModelEstimationImageFilter ( const Self &  )

private

Member Function Documentation

template<class TInputImage , class TOutputImage >

virtual void itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::ComputeBasisMatrix ( )

inlinevirtual

compute basis matrix which incorporates radial matrix and spherical matrix

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >, and itk::GeneralizedHighOrderTensorImageFilter< TInputImage, TOutputImage >.

Definition at line 84 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

virtual void itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::ComputeRegularizationWeight ( )

inlinevirtual

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >, and itk::GeneralizedHighOrderTensorImageFilter< TInputImage, TOutputImage >.

Definition at line 87 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

virtual::itk::LightObject::Pointer itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::CreateAnother

(

void

)

const

template<class TInputImage , class TOutputImage >

virtual MatrixPointer itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::GetBasisMatrix ( )

virtual

template<class TInputImage , class TOutputImage >

virtual double itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::GetMD0 ( )

virtual

template<class TInputImage , class TOutputImage >

virtual const char* itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >, itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >, itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >, and itk::GeneralizedHighOrderTensorImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

LightObject::Pointer itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::InternalClone ( ) const

protected

Definition at line 40 of file itkDiffusionModelEstimationImageFilter.hxx.

References itkShowPositionThreadedLogger, and itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::VerifyInputParameters().

Referenced by itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::DiffusionModelEstimationImageFilter().

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template<class TInputImage , class TOutputImage >

itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::itkGetObjectMacro	(	SamplingSchemeQSpace	,
		SamplingSchemeQSpaceType
	)

template<class TInputImage , class TOutputImage >

itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::itkTypedefMaskedImageToImageMacro

(

Superclass

)

Convenient Typedefs.

template<class TInputImage , class TOutputImage >

static Pointer itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::New ( )

static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage >

void itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::operator= ( const Self &  )

private

template<class TInputImage , class TOutputImage >

void itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protectedvirtual

Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >, itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >, itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >, and itk::GeneralizedHighOrderTensorImageFilter< TInputImage, TOutputImage >.

Definition at line 83 of file itkDiffusionModelEstimationImageFilter.hxx.

References utl::PrintUtlMatrix(), utl::PrintUtlVector(), and PrintVar1.

Referenced by itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::VerifyInputParameters().

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template<class TInputImage , class TOutputImage >

virtual void itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::SetMD0 ( double  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::SetSamplingSchemeQSpace ( SamplingSchemeQSpaceType *  _arg )

virtual

template<class TInputImage , class TOutputImage >

void itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::VerifyInputParameters ( ) const

protectedvirtual

Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >, itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >, and itk::GeneralizedHighOrderTensorImageFilter< TInputImage, TOutputImage >.

Definition at line 65 of file itkDiffusionModelEstimationImageFilter.hxx.

References itk::IsImageEmpty(), itkShowPositionThreadedLogger, itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::PrintSelf(), and utlGlobalException.

Referenced by itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::InternalClone().

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Member Data Documentation

template<class TInputImage , class TOutputImage >

MatrixPointer itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::m_BasisMatrix

protected

Definition at line 106 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

double itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::m_MD0

protected

typical MD value for typical scale

Definition at line 104 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

VectorPointer itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::m_RegularizationWeight

protected

used for regulaization

Definition at line 109 of file itkDiffusionModelEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

SamplingSchemeQSpacePointer itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >::m_SamplingSchemeQSpace

protected

Sampling Scheme in q-space

Definition at line 101 of file itkDiffusionModelEstimationImageFilter.h.

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The documentation for this class was generated from the following files:

• Modules/DiffusionModels/include/itkDiffusionModelEstimationImageFilter.h
• Modules/DiffusionModels/include/itkDiffusionModelEstimationImageFilter.hxx