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Diffusion MRI Tool
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itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage > Class Template Reference
DiffusionModels

#include <itkSphericalPolarFourierImageFilter.h>

+ Inheritance diagram for itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >:
+ Collaboration diagram for itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >

estimate the coefficients in SPF model

Author
Jian Cheng (JC), jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om

Definition at line 36 of file itkSphericalPolarFourierImageFilter.h.

Public Types

typedef SmartPointer< const Self > ConstPointer
 
typedef Superclass::EstimationType EstimationType
 
typedef Superclass::L1FISTASolverType L1FISTASolverType
 
typedef Superclass::L2SolverType L2SolverType
 
typedef Superclass::MatrixPointer MatrixPointer
 
typedef Superclass::MatrixType MatrixType
 
typedef SmartPointer< Self > Pointer
 
typedef Superclass::SamplingSchemeQSpacePointer SamplingSchemeQSpacePointer
 
typedef Superclass::SamplingSchemeQSpaceType SamplingSchemeQSpaceType
 
typedef SphericalPolarFourierImageFilter Self
 
typedef SphericalPolarFourierRadialGenerator< double > SPFGenerator
 
typedef Superclass::STDVectorPointer STDVectorPointer
 
typedef Superclass::STDVectorType STDVectorType
 
typedef SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage > Superclass
 
typedef Superclass::VectorPointer VectorPointer
 
typedef Superclass::VectorType VectorType
 
- Public Types inherited from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self > ConstPointer
 
enum  EstimationType {
  LS =0,
  L1_2,
  L1_DL
}
 
typedef L1RegularizedLeastSquaresFISTASolver< double > L1FISTASolverType
 
enum  L1SolverType {
  FISTA_LS =0,
  SPAMS
}
 
typedef SpamsWeightedLassoSolver< double > L1SpamsSolverType
 
typedef L2RegularizedLeastSquaresSolver< double > L2SolverType
 
typedef Superclass::MatrixPointer MatrixPointer
 
typedef Superclass::MatrixType MatrixType
 
typedef SmartPointer< Self > Pointer
 
typedef SphericalPolarFourierEstimationImageFilter Self
 
typedef Superclass::STDVectorPointer STDVectorPointer
 
typedef Superclass::STDVectorType STDVectorType
 
typedef DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage > Superclass
 
typedef Superclass::VectorPointer VectorPointer
 
typedef Superclass::VectorType VectorType
 
- Public Types inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self > ConstPointer
 
typedef Superclass::InputImageConstPointer InputImageConstPointer
 
typedef Superclass::InputImageIndexType InputImageIndexType
 
typedef Superclass::InputImagePixelType InputImagePixelType
 
typedef Superclass::InputImagePointer InputImagePointer
 
typedef Superclass::InputImageRegionType InputImageRegionType
 
typedef Superclass::InputImageSizeType InputImageSizeType
 
typedef Superclass::InputImageSpacingType InputImageSpacingType
 
typedef Superclass::InputImageType InputImageType
 
typedef Superclass::MaskImageType MaskImageType
 
typedef Superclass::MatrixPointer MatrixPointer
 
typedef Superclass::MatrixType MatrixType
 
typedef Superclass::OutputImageIndexType OutputImageIndexType
 
typedef Superclass::OutputImagePixelType OutputImagePixelType
 
typedef Superclass::OutputImagePointer OutputImagePointer
 
typedef Superclass::OutputImageRegionType OutputImageRegionType
 
typedef Superclass::OutputImageSizeType OutputImageSizeType
 
typedef Superclass::OutputImageSpacingType OutputImageSpacingType
 
typedef Superclass::OutputImageType OutputImageType
 
typedef SmartPointer< Self > Pointer
 
typedef DiffusionModelEstimationInSphericalCoordinateImageFilter Self
 
typedef Superclass::STDVectorPointer STDVectorPointer
 
typedef Superclass::STDVectorType STDVectorType
 
typedef DiffusionModelEstimationImageFilter< TInputImage, TOutputImage > Superclass
 
typedef Superclass::VectorPointer VectorPointer
 
typedef Superclass::VectorType VectorType
 
- Public Types inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self > ConstPointer
 
typedef utl_shared_ptr< MatrixType > MatrixPointer
 
typedef utl::NDArray< double, 2 > MatrixType
 
typedef SmartPointer< Self > Pointer
 
typedef SamplingSchemeQSpaceType::Pointer SamplingSchemeQSpacePointer
 
typedef SamplingSchemeQSpace< double > SamplingSchemeQSpaceType
 
typedef SamplingSchemeRSpaceType::Pointer SamplingSchemeRSpacePointer
 
typedef SamplingScheme3D< double > SamplingSchemeRSpaceType
 
typedef DiffusionModelEstimationImageFilter Self
 
typedef utl_shared_ptr< STDVectorType > STDVectorPointer
 
typedef std::vector< double > STDVectorType
 
typedef MaskedImageToImageFilter< TInputImage, TOutputImage > Superclass
 
typedef utl_shared_ptr< VectorType > VectorPointer
 
typedef utl::NDArray< double, 1 > VectorType
 
- Public Types inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self > ConstPointer
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::IndexType InputImageIndexType
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef InputImageType::SizeType InputImageSizeType
 
typedef InputImageType::SpacingType InputImageSpacingType
 
typedef TInputImage InputImageType
 
typedef LoggerType::Pointer LoggerPointer
 
typedef ThreadLogger LoggerType
 
typedef utl_shared_ptr< LoggerVectorType > LoggerVectorPointer
 
typedef std::vector< LoggerPointer > LoggerVectorType
 
typedef MaskImageType::Pointer MaskImagePointer
 
typedef Image< double, 3 > MaskImageType
 
typedef OutputImageType::IndexType OutputImageIndexType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef OutputImageType::SizeType OutputImageSizeType
 
typedef OutputImageType::SpacingType OutputImageSpacingType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< Self > Pointer
 
typedef MaskedImageToImageFilter Self
 
typedef ImageToImageFilter< TInputImage, TOutputImage > Superclass
 

Public Member Functions

void ComputeBasisMatrix () ITK_OVERRIDE
 
void ComputeRadialMatrix () ITK_OVERRIDE
 
void ComputeRadialVectorForE0InBasis ()
 
void ComputeRadialVectorForE0InDWI ()
 
void ComputeRegularizationWeight () ITK_OVERRIDE
 
double ComputeScale (const bool setScale=true) ITK_OVERRIDE
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
std::vector< int > DimToRank (const int dimm) const ITK_OVERRIDE
 
virtual STDVectorPointer GetGn0 ()
 
int GetIndexJ (const int n, const int l, const int m) const ITK_OVERRIDE
 
std::vector< int > GetIndexNLM (const int index) const ITK_OVERRIDE
 
virtual const char * GetNameOfClass () const
 
 itkTypedefMaskedImageToImageMacro (Superclass)
 
int RankToDim (const bool is_radial=false, const int radialRank=-1, const int shRank=-1) const ITK_OVERRIDE
 
void SetBasisScale (const double scale) ITK_OVERRIDE
 
- Public Member Functions inherited from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual double GetB0Weight ()
 
virtual MatrixPointer GetBasisCombinationMatrix ()
 
virtual VectorPointer GetBasisEnergyDL ()
 
virtual double GetBasisEnergyPowerDL ()
 
virtual double GetBasisScale ()
 
virtual EstimationType GetEstimationType ()
 
virtual bool GetIsOriginalBasis ()
 
virtual L1SolverType GetL1SolverType ()
 
virtual double GetLambdaL1 ()
 
virtual double GetLambdaRadial ()
 
virtual double GetLambdaSpherical ()
 
virtual const ScalarImageType * GetMDImage () const
 
virtual VectorPointer GetRegularizationWeight ()
 
virtual const ScalarImageType * GetScaleImage () const
 
bool IsAdaptiveScale () const
 
virtual void IsOriginalBasisOff ()
 
virtual void IsOriginalBasisOn ()
 
 itkGetObjectMacro (MDImage, ScalarImageType)
 
 itkGetObjectMacro (ScaleImage, ScalarImageType)
 
 itkSetGetBooleanMacro (IsAnalyticalB0)
 
 itkTypedefMaskedImageToImageMacro (Superclass)
 
virtual void SetB0Weight (double _arg)
 
virtual void SetBasisCombinationMatrix (MatrixPointer _arg)
 
virtual void SetBasisEnergyDL (VectorPointer _arg)
 
virtual void SetBasisEnergyPowerDL (double _arg)
 
virtual void SetEstimationType (EstimationType _arg)
 
virtual void SetIsOriginalBasis (bool _arg)
 
virtual void SetL1FISTASolver (typename L1FISTASolverType::Pointer _arg)
 
virtual void SetL1SolverType (L1SolverType _arg)
 
virtual void SetL1SpamsSolver (typename L1SpamsSolverType::Pointer _arg)
 
virtual void SetLambdaL1 (double _arg)
 
virtual void SetLambdaRadial (double _arg)
 
virtual void SetLambdaSpherical (double _arg)
 
virtual void SetMDImage (ScalarImageType *_arg)
 
virtual void SetScaleImage (ScalarImageType *_arg)
 
- Public Member Functions inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
virtual void ComputeSHMatrix ()
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual MatrixPointer GetBasisRadialMatrix ()
 
virtual MatrixPointer GetBasisSHMatrix ()
 
virtual int GetRadialRank ()
 
virtual int GetSHRank ()
 
virtual void SetRadialRank (int _arg)
 
virtual void SetSHRank (int _arg)
 
- Public Member Functions inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual MatrixPointer GetBasisMatrix ()
 
virtual double GetMD0 ()
 
 itkGetObjectMacro (SamplingSchemeQSpace, SamplingSchemeQSpaceType)
 
 itkTypedefMaskedImageToImageMacro (Superclass)
 
virtual void SetMD0 (double _arg)
 
virtual void SetSamplingSchemeQSpace (SamplingSchemeQSpaceType *_arg)
 
- Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const LoggerType * GetLogger () const
 
virtual const MaskImageType * GetMaskImage () const
 
bool IsMaskUsed ()
 
 itkGetObjectMacro (MaskImage, MaskImageType)
 
 itkGetObjectMacro (Logger, LoggerType)
 
 itkSetGetMacro (LogLevel, int)
 
virtual void SetLogger (LoggerType *_arg)
 
virtual void SetMaskImage (MaskImageType *_arg)
 
void SetMaskImage (const std::string &file)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static Pointer New ()
 

Protected Member Functions

void BeforeThreadedGenerateData () ITK_OVERRIDE
 
void ComputeBasisMatrixForB0 ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
void PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
 
 SphericalPolarFourierImageFilter ()
 
void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId) ITK_OVERRIDE
 
virtual ~SphericalPolarFourierImageFilter ()
 
- Protected Member Functions inherited from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >
void BeforeThreadedGenerateData () ITK_OVERRIDE
 
void GenerateOutputInformation () ITK_OVERRIDE
 
void InitializeThreadedLibraries () ITK_OVERRIDE
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
 SphericalPolarFourierEstimationImageFilter ()
 
void VerifyInputParameters () const ITK_OVERRIDE
 
virtual ~SphericalPolarFourierEstimationImageFilter ()
 
- Protected Member Functions inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
 DiffusionModelEstimationInSphericalCoordinateImageFilter ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
virtual ~DiffusionModelEstimationInSphericalCoordinateImageFilter ()
 
- Protected Member Functions inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
 DiffusionModelEstimationImageFilter ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
virtual ~DiffusionModelEstimationImageFilter ()
 
- Protected Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
void CreateLoggerVector ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
 MaskedImageToImageFilter ()
 
std::string ThreadIDToString () const
 
virtual void VerifyMaskInformation () const
 
void WriteLogger (const std::string &str, const LoggerBase::PriorityLevelType level=LoggerBase::DEBUG) const
 
virtual ~MaskedImageToImageFilter ()
 

Protected Attributes

VectorPointer m_G0DWI
 
STDVectorPointer m_Gn0
 
- Protected Attributes inherited from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >
double m_B0Weight
 
MatrixPointer m_BasisCombinationMatrix
 
VectorPointer m_BasisEnergyDL
 
double m_BasisEnergyPowerDL
 
MatrixPointer m_BasisMatrixForB0
 
double m_BasisScale
 
EstimationType m_EstimationType
 
bool m_IsAnalyticalB0
 
bool m_IsOriginalBasis
 
L1FISTASolverType::Pointer m_L1FISTASolver
 
L1SolverType m_L1SolverType
 
L1SpamsSolverType::Pointer m_L1SpamsSolver
 
L2SolverType::Pointer m_L2Solver
 
double m_LambdaL1
 
double m_LambdaL2
 
double m_LambdaRadial
 
double m_LambdaSpherical
 
ScalarImageType::Pointer m_MDImage
 
ScalarImageType::Pointer m_ScaleImage
 
- Protected Attributes inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
MatrixPointer m_BasisRadialMatrix
 
MatrixPointer m_BasisSHMatrix
 
int m_RadialRank
 
int m_SHRank
 
- Protected Attributes inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
MatrixPointer m_BasisMatrix
 
double m_MD0
 
VectorPointer m_RegularizationWeight
 
SamplingSchemeQSpacePointer m_SamplingSchemeQSpace
 
- Protected Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
LoggerPointer m_Logger
 
LoggerVectorPointer m_LoggerVector
 
int m_LogLevel
 
MaskImagePointer m_MaskImage
 
int m_ThreadID
 

Private Member Functions

void operator= (const Self &)
 
 SphericalPolarFourierImageFilter (const Self &)
 

Additional Inherited Members

- Static Public Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 

Member Typedef Documentation

template<class TInputImage , class TOutputImage >
typedef SmartPointer<const Self> itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 44 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::EstimationType itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::EstimationType

Definition at line 63 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::L1FISTASolverType itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::L1FISTASolverType

Definition at line 62 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::L2SolverType itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::L2SolverType

Definition at line 61 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::MatrixPointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::MatrixPointer

Definition at line 56 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::MatrixType itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::MatrixType

Definition at line 54 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef SmartPointer<Self> itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::Pointer

Definition at line 43 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::SamplingSchemeQSpacePointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::SamplingSchemeQSpacePointer

Definition at line 67 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::SamplingSchemeQSpaceType itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::SamplingSchemeQSpaceType

Definition at line 68 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef SphericalPolarFourierImageFilter itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 41 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef SphericalPolarFourierRadialGenerator<double> itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::SPFGenerator

Definition at line 65 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::STDVectorPointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::STDVectorPointer

Definition at line 59 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::STDVectorType itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::STDVectorType

Definition at line 58 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef SphericalPolarFourierEstimationImageFilter<TInputImage,TOutputImage> itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::Superclass

Definition at line 42 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::VectorPointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::VectorPointer

Definition at line 57 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::VectorType itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::VectorType

Definition at line 55 of file itkSphericalPolarFourierImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >
itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::SphericalPolarFourierImageFilter ( )
protected

Definition at line 34 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::SetBasisScale().

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template<class TInputImage , class TOutputImage >
virtual itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::~SphericalPolarFourierImageFilter ( )
inlineprotectedvirtual

Definition at line 91 of file itkSphericalPolarFourierImageFilter.h.

References ITK_OVERRIDE.

template<class TInputImage , class TOutputImage >
itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::SphericalPolarFourierImageFilter ( const Self &  )
private

Member Function Documentation

template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData ( )
protected

Definition at line 575 of file itkSphericalPolarFourierImageFilter.hxx.

References utl::ConnectUtlMatrix(), utl::CreateExpandedPath(), utl::InitializeThreadedLibraries(), itkShowPositionThreadedLogger, utl::LearnedSPFDictionary_SH8_RA4_K250, utl::PrintUtlMatrix(), utl::PrintUtlVector(), utl::ProductUtlMM(), utl::ReadMatrix(), itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ThreadedGenerateData(), utlException, and utlGlobalException.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRegularizationWeight().

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template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeBasisMatrix ( )
virtual

compute basis matrix which incorporates radial matrix and spherical matrix

Reimplemented from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >.

Definition at line 330 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeBasisMatrixForB0(), utl::ComputeSHMatrix(), itkShowPositionThreadedLogger, utl::PrintUtlMatrix(), and utlException.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRadialMatrix().

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template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeBasisMatrixForB0 ( )
protected

Definition at line 476 of file itkSphericalPolarFourierImageFilter.hxx.

References CARTESIAN_TO_CARTESIAN, itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRegularizationWeight(), DIRECTION_NODUPLICATE, and itkShowPositionThreadedLogger.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeBasisMatrix().

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template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRadialMatrix ( )
virtual

compute radial matrix

Reimplemented from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >.

Definition at line 221 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeBasisMatrix(), itkShowPositionThreadedLogger, utl::PrintUtlMatrix(), and utlGlobalException.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRadialVectorForE0InDWI().

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template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRadialVectorForE0InBasis ( )

Definition at line 173 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRadialVectorForE0InDWI(), and itkShowPositionThreadedLogger.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::RankToDim().

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template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRadialVectorForE0InDWI ( )

Definition at line 190 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRadialMatrix(), and itkShowPositionThreadedLogger.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRadialVectorForE0InBasis().

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template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRegularizationWeight ( )
virtual

Reimplemented from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >.

Definition at line 496 of file itkSphericalPolarFourierImageFilter.hxx.

References spams::abs(), itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData(), utl::CreateExpandedPath(), itkShowPositionThreadedLogger, utl::LearnedSPFDictionary_SH8_RA4_K250, utl::LearnedSPFEnergy_SH8_RA4_K250, utl::PowerVector(), utl::PrintUtlMatrix(), utl::PrintUtlVector(), utl::ReadMatrix(), utl::ReadVector(), utl::StdVectorToUtlVector(), and utlException.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeBasisMatrixForB0().

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template<class TInputImage , class TOutputImage >
double itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeScale ( const bool  setScale = true)
virtual

need to be overidden by subclasses

Reimplemented from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >.

Definition at line 88 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::GetIndexNLM(), itkShowPositionThreadedLogger, and M_PI.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::InternalClone().

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template<class TInputImage , class TOutputImage >
virtual::itk::LightObject::Pointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::CreateAnother ( void  ) const
template<class TInputImage , class TOutputImage >
std::vector< int > itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::DimToRank ( const int  dimm) const
virtual

from dimension to rank

Reimplemented from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >.

Definition at line 135 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::RankToDim(), and utlException.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::GetIndexJ().

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template<class TInputImage , class TOutputImage >
virtual STDVectorPointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::GetGn0 ( )
virtual
template<class TInputImage , class TOutputImage >
int itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::GetIndexJ ( const int  n,
const int  l,
const int  m 
) const
virtual

Reimplemented from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >.

Definition at line 127 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::DimToRank(), and utl::GetIndexSHj().

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::GetIndexNLM().

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template<class TInputImage , class TOutputImage >
std::vector< int > itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::GetIndexNLM ( const int  index) const
virtual

Reimplemented from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >.

Definition at line 110 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::GetIndexJ(), and utl::GetIndexSHlm().

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeScale().

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template<class TInputImage , class TOutputImage >
virtual const char* itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods)

Reimplemented from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >
LightObject::Pointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::InternalClone ( ) const
protected

Definition at line 69 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeScale(), and itkShowPositionThreadedLogger.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::SetBasisScale().

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template<class TInputImage , class TOutputImage >
itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::itkTypedefMaskedImageToImageMacro ( Superclass  )
template<class TInputImage , class TOutputImage >
static Pointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::New ( )
static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::operator= ( const Self &  )
private
template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Reimplemented from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >.

Definition at line 1077 of file itkSphericalPolarFourierImageFilter.hxx.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ThreadedGenerateData().

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template<class TInputImage , class TOutputImage >
int itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::RankToDim ( const bool  is_radial = false,
const int  radialRank = -1,
const int  shRank = -1 
) const
virtual

from rank to dimension

Reimplemented from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >.

Definition at line 159 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ComputeRadialVectorForE0InBasis(), and utlException.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::DimToRank().

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template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::SetBasisScale ( const double  scale)
virtual

Reimplemented from itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >.

Definition at line 45 of file itkSphericalPolarFourierImageFilter.hxx.

References itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::InternalClone(), and itkShowPositionThreadedLogger.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::SphericalPolarFourierImageFilter().

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template<class TInputImage , class TOutputImage >
void itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::ThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread,
ThreadIdType  threadId 
)
protected

Definition at line 727 of file itkSphericalPolarFourierImageFilter.hxx.

References utl::ConnectUtlMatrix(), utl::NDArrayBase< T, Dim >::ElementAbsolute(), itk::IsImageEmpty(), itkShowPositionThreadedLogger, M_PI, utl::NDArrayBase< T, Dim >::Print(), itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::PrintSelf(), utl::PrintUtlMatrix(), utl::PrintUtlVector(), utl::PrintVector(), utl::ProductUtlMM(), utl::ProductUtlMv(), utl::NDArrayBase< T, Dim >::Size(), and utlException.

Referenced by itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData().

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Member Data Documentation

template<class TInputImage , class TOutputImage >
VectorPointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::m_G0DWI
protected

Definition at line 104 of file itkSphericalPolarFourierImageFilter.h.

template<class TInputImage , class TOutputImage >
STDVectorPointer itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >::m_Gn0
protected

Definition at line 103 of file itkSphericalPolarFourierImageFilter.h.

The documentation for this class was generated from the following files:
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