itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage > Class Template Reference

#include <itkSphericalPolarFourierEstimationImageFilter.h>

Inheritance diagram for itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >

estimate the coeffcients of generalized Spherical Polar Fourier basis which can be separated into differe radial basis and sphercial basis.

Author

Jian Cheng (JC), jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om

Definition at line 40 of file itkSphericalPolarFourierEstimationImageFilter.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer
enum	EstimationType {   LS =0,   L1_2,   L1_DL }
typedef L1RegularizedLeastSquaresFISTASolver< double >	L1FISTASolverType
enum	L1SolverType {   FISTA_LS =0,   SPAMS }
typedef SpamsWeightedLassoSolver< double >	L1SpamsSolverType
typedef L2RegularizedLeastSquaresSolver< double >	L2SolverType
typedef Superclass::MatrixPointer	MatrixPointer
typedef Superclass::MatrixType	MatrixType
typedef SmartPointer< Self >	Pointer
typedef SphericalPolarFourierEstimationImageFilter	Self
typedef Superclass::STDVectorPointer	STDVectorPointer
typedef Superclass::STDVectorType	STDVectorType
typedef DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >	Superclass
typedef Superclass::VectorPointer	VectorPointer
typedef Superclass::VectorType	VectorType
Public Types inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::InputImageConstPointer	InputImageConstPointer
typedef Superclass::InputImageIndexType	InputImageIndexType
typedef Superclass::InputImagePixelType	InputImagePixelType
typedef Superclass::InputImagePointer	InputImagePointer
typedef Superclass::InputImageRegionType	InputImageRegionType
typedef Superclass::InputImageSizeType	InputImageSizeType
typedef Superclass::InputImageSpacingType	InputImageSpacingType
typedef Superclass::InputImageType	InputImageType
typedef Superclass::MaskImageType	MaskImageType
typedef Superclass::MatrixPointer	MatrixPointer
typedef Superclass::MatrixType	MatrixType
typedef Superclass::OutputImageIndexType	OutputImageIndexType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef Superclass::OutputImagePointer	OutputImagePointer
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef Superclass::OutputImageSizeType	OutputImageSizeType
typedef Superclass::OutputImageSpacingType	OutputImageSpacingType
typedef Superclass::OutputImageType	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef DiffusionModelEstimationInSphericalCoordinateImageFilter	Self
typedef Superclass::STDVectorPointer	STDVectorPointer
typedef Superclass::STDVectorType	STDVectorType
typedef DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >	Superclass
typedef Superclass::VectorPointer	VectorPointer
typedef Superclass::VectorType	VectorType
Public Types inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef utl_shared_ptr< MatrixType >	MatrixPointer
typedef utl::NDArray< double, 2 >	MatrixType
typedef SmartPointer< Self >	Pointer
typedef SamplingSchemeQSpaceType::Pointer	SamplingSchemeQSpacePointer
typedef SamplingSchemeQSpace< double >	SamplingSchemeQSpaceType
typedef SamplingSchemeRSpaceType::Pointer	SamplingSchemeRSpacePointer
typedef SamplingScheme3D< double >	SamplingSchemeRSpaceType
typedef DiffusionModelEstimationImageFilter	Self
typedef utl_shared_ptr< STDVectorType >	STDVectorPointer
typedef std::vector< double >	STDVectorType
typedef MaskedImageToImageFilter< TInputImage, TOutputImage >	Superclass
typedef utl_shared_ptr< VectorType >	VectorPointer
typedef utl::NDArray< double, 1 >	VectorType
Public Types inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::IndexType	InputImageIndexType
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef InputImageType::SizeType	InputImageSizeType
typedef InputImageType::SpacingType	InputImageSpacingType
typedef TInputImage	InputImageType
typedef LoggerType::Pointer	LoggerPointer
typedef ThreadLogger	LoggerType
typedef utl_shared_ptr< LoggerVectorType >	LoggerVectorPointer
typedef std::vector< LoggerPointer >	LoggerVectorType
typedef MaskImageType::Pointer	MaskImagePointer
typedef Image< double, 3 >	MaskImageType
typedef OutputImageType::IndexType	OutputImageIndexType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef OutputImageType::SizeType	OutputImageSizeType
typedef OutputImageType::SpacingType	OutputImageSpacingType
typedef TOutputImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef MaskedImageToImageFilter	Self
typedef ImageToImageFilter< TInputImage, TOutputImage >	Superclass

Public Member Functions
virtual double	ComputeScale (const bool setScale=true)
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual std::vector< int >	DimToRank (const int dimm) const
virtual double	GetB0Weight ()
virtual MatrixPointer	GetBasisCombinationMatrix ()
virtual VectorPointer	GetBasisEnergyDL ()
virtual double	GetBasisEnergyPowerDL ()
virtual double	GetBasisScale ()
virtual EstimationType	GetEstimationType ()
virtual int	GetIndexJ (const int n, const int l, const int m) const
virtual std::vector< int >	GetIndexNLM (const int index) const
virtual bool	GetIsOriginalBasis ()
virtual L1SolverType	GetL1SolverType ()
virtual double	GetLambdaL1 ()
virtual double	GetLambdaRadial ()
virtual double	GetLambdaSpherical ()
virtual const ScalarImageType *	GetMDImage () const
virtual const char *	GetNameOfClass () const
virtual VectorPointer	GetRegularizationWeight ()
virtual const ScalarImageType *	GetScaleImage () const
bool	IsAdaptiveScale () const
virtual void	IsOriginalBasisOff ()
virtual void	IsOriginalBasisOn ()
	itkGetObjectMacro (MDImage, ScalarImageType)
	itkGetObjectMacro (ScaleImage, ScalarImageType)
	itkSetGetBooleanMacro (IsAnalyticalB0)
	itkTypedefMaskedImageToImageMacro (Superclass)
virtual int	RankToDim (const bool is_radial=false, const int radialRank=-1, const int shRank=-1) const
virtual void	SetB0Weight (double _arg)
virtual void	SetBasisCombinationMatrix (MatrixPointer _arg)
virtual void	SetBasisEnergyDL (VectorPointer _arg)
virtual void	SetBasisEnergyPowerDL (double _arg)
virtual void	SetBasisScale (const double scale)
virtual void	SetEstimationType (EstimationType _arg)
virtual void	SetIsOriginalBasis (bool _arg)
virtual void	SetL1FISTASolver (typename L1FISTASolverType::Pointer _arg)
virtual void	SetL1SolverType (L1SolverType _arg)
virtual void	SetL1SpamsSolver (typename L1SpamsSolverType::Pointer _arg)
virtual void	SetLambdaL1 (double _arg)
virtual void	SetLambdaRadial (double _arg)
virtual void	SetLambdaSpherical (double _arg)
virtual void	SetMDImage (ScalarImageType *_arg)
virtual void	SetScaleImage (ScalarImageType *_arg)
Public Member Functions inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
virtual void	ComputeRadialMatrix ()
virtual void	ComputeSHMatrix ()
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual MatrixPointer	GetBasisRadialMatrix ()
virtual MatrixPointer	GetBasisSHMatrix ()
virtual int	GetRadialRank ()
virtual int	GetSHRank ()
virtual void	SetRadialRank (int _arg)
virtual void	SetSHRank (int _arg)
Public Member Functions inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
virtual void	ComputeBasisMatrix ()
virtual void	ComputeRegularizationWeight ()
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual MatrixPointer	GetBasisMatrix ()
virtual double	GetMD0 ()
	itkGetObjectMacro (SamplingSchemeQSpace, SamplingSchemeQSpaceType)
	itkTypedefMaskedImageToImageMacro (Superclass)
virtual void	SetMD0 (double _arg)
virtual void	SetSamplingSchemeQSpace (SamplingSchemeQSpaceType *_arg)
Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
virtual const LoggerType *	GetLogger () const
virtual const MaskImageType *	GetMaskImage () const
bool	IsMaskUsed ()
	itkGetObjectMacro (MaskImage, MaskImageType)
	itkGetObjectMacro (Logger, LoggerType)
	itkSetGetMacro (LogLevel, int)
virtual void	SetLogger (LoggerType *_arg)
virtual void	SetMaskImage (MaskImageType *_arg)
void	SetMaskImage (const std::string &file)

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
static Pointer	New ()
Static Public Member Functions inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
static Pointer	New ()
Static Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static Pointer	New ()

Protected Member Functions
void	BeforeThreadedGenerateData () ITK_OVERRIDE
void	GenerateOutputInformation () ITK_OVERRIDE
void	InitializeThreadedLibraries () ITK_OVERRIDE
LightObject::Pointer	InternalClone () const ITK_OVERRIDE
void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
	SphericalPolarFourierEstimationImageFilter ()
void	VerifyInputParameters () const ITK_OVERRIDE
virtual	~SphericalPolarFourierEstimationImageFilter ()
Protected Member Functions inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
	DiffusionModelEstimationInSphericalCoordinateImageFilter ()
LightObject::Pointer	InternalClone () const ITK_OVERRIDE
virtual	~DiffusionModelEstimationInSphericalCoordinateImageFilter ()
Protected Member Functions inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
	DiffusionModelEstimationImageFilter ()
LightObject::Pointer	InternalClone () const ITK_OVERRIDE
virtual	~DiffusionModelEstimationImageFilter ()
Protected Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
void	CreateLoggerVector ()
LightObject::Pointer	InternalClone () const ITK_OVERRIDE
	MaskedImageToImageFilter ()
std::string	ThreadIDToString () const
virtual void	VerifyMaskInformation () const
void	WriteLogger (const std::string &str, const LoggerBase::PriorityLevelType level=LoggerBase::DEBUG) const
virtual	~MaskedImageToImageFilter ()

Protected Attributes
double	m_B0Weight
MatrixPointer	m_BasisCombinationMatrix
VectorPointer	m_BasisEnergyDL
double	m_BasisEnergyPowerDL
MatrixPointer	m_BasisMatrixForB0
double	m_BasisScale
EstimationType	m_EstimationType
bool	m_IsAnalyticalB0
bool	m_IsOriginalBasis
L1FISTASolverType::Pointer	m_L1FISTASolver
L1SolverType	m_L1SolverType
L1SpamsSolverType::Pointer	m_L1SpamsSolver
L2SolverType::Pointer	m_L2Solver
double	m_LambdaL1
double	m_LambdaL2
double	m_LambdaRadial
double	m_LambdaSpherical
ScalarImageType::Pointer	m_MDImage
ScalarImageType::Pointer	m_ScaleImage
Protected Attributes inherited from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >
MatrixPointer	m_BasisRadialMatrix
MatrixPointer	m_BasisSHMatrix
int	m_RadialRank
int	m_SHRank
Protected Attributes inherited from itk::DiffusionModelEstimationImageFilter< TInputImage, TOutputImage >
MatrixPointer	m_BasisMatrix
double	m_MD0
VectorPointer	m_RegularizationWeight
SamplingSchemeQSpacePointer	m_SamplingSchemeQSpace
Protected Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
LoggerPointer	m_Logger
LoggerVectorPointer	m_LoggerVector
int	m_LogLevel
MaskImagePointer	m_MaskImage
int	m_ThreadID

Private Member Functions
void	operator= (const Self &)
	SphericalPolarFourierEstimationImageFilter (const Self &)

Additional Inherited Members
Static Public Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension
static const unsigned int	OutputImageDimension

Member Typedef Documentation

template<class TInputImage , class TOutputImage >

typedef SmartPointer<const Self> itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 48 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef L1RegularizedLeastSquaresFISTASolver<double> itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::L1FISTASolverType

Definition at line 84 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SpamsWeightedLassoSolver<double> itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::L1SpamsSolverType

Definition at line 85 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef L2RegularizedLeastSquaresSolver<double> itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::L2SolverType

Definition at line 83 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef Superclass::MatrixPointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::MatrixPointer

Definition at line 61 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef Superclass::MatrixType itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::MatrixType

Definition at line 59 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SmartPointer<Self> itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::Pointer

Definition at line 47 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef SphericalPolarFourierEstimationImageFilter itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 45 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef Superclass::STDVectorPointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::STDVectorPointer

Definition at line 64 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef Superclass::STDVectorType itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::STDVectorType

Definition at line 63 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef DiffusionModelEstimationInSphericalCoordinateImageFilter<TInputImage,TOutputImage> itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::Superclass

Definition at line 46 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef Superclass::VectorPointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::VectorPointer

Definition at line 62 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

typedef Superclass::VectorType itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::VectorType

Definition at line 60 of file itkSphericalPolarFourierEstimationImageFilter.h.

Member Enumeration Documentation

template<class TInputImage , class TOutputImage >

enum itk::SphericalPolarFourierEstimationImageFilter::EstimationType

Enumerator
LS
L1_2
L1_DL

Definition at line 66 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

enum itk::SphericalPolarFourierEstimationImageFilter::L1SolverType

Type of L1 solver:

Parameters

FISTA_LS	FISTA with least square initialization
SPAMS	weighted lasso in spams

Enumerator
FISTA_LS
SPAMS

Definition at line 77 of file itkSphericalPolarFourierEstimationImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >

itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SphericalPolarFourierEstimationImageFilter ( )

protected

Definition at line 29 of file itkSphericalPolarFourierEstimationImageFilter.hxx.

References itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::VerifyInputParameters().

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template<class TInputImage , class TOutputImage >

virtual itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::~SphericalPolarFourierEstimationImageFilter ( )

inlineprotectedvirtual

Definition at line 161 of file itkSphericalPolarFourierEstimationImageFilter.h.

References utl::InitializeThreadedLibraries(), and ITK_OVERRIDE.

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template<class TInputImage , class TOutputImage >

itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SphericalPolarFourierEstimationImageFilter ( const Self &  )

private

Member Function Documentation

template<class TInputImage , class TOutputImage >

void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData ( )

protected

Definition at line 162 of file itkSphericalPolarFourierEstimationImageFilter.hxx.

References itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::InitializeThreadedLibraries(), itk::IsImageEmpty(), itkShowPositionThreadedLogger, utl::Print(), and utlGlobalException.

Referenced by itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::InternalClone().

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template<class TInputImage , class TOutputImage >

double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::ComputeScale ( const bool  setScale = true )

virtual

need to be overidden by subclasses

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >, and itk::GeneralizedHighOrderTensorImageFilter< TInputImage, TOutputImage >.

Definition at line 87 of file itkSphericalPolarFourierEstimationImageFilter.hxx.

References itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetBasisScale().

Referenced by itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GenerateOutputInformation().

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template<class TInputImage , class TOutputImage >

virtual::itk::LightObject::Pointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::CreateAnother

(

void

)

const

template<class TInputImage , class TOutputImage >

virtual std::vector<int> itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::DimToRank ( const int  dimm ) const

inlinevirtual

from dimension to rank

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >, and itk::GeneralizedHighOrderTensorImageFilter< TInputImage, TOutputImage >.

Definition at line 140 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GenerateOutputInformation ( void  )

protected

The filter produces an image which is a different size than its input image. As such, it needs to provide an implemenation for GenerateOutputInformation() which set the output information accordingly.

Definition at line 75 of file itkSphericalPolarFourierEstimationImageFilter.hxx.

References itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::ComputeScale(), and itkShowPositionThreadedLogger.

Referenced by itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::VerifyInputParameters().

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template<class TInputImage , class TOutputImage >

virtual double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetB0Weight ( )

virtual

template<class TInputImage , class TOutputImage >

virtual MatrixPointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetBasisCombinationMatrix ( )

virtual

template<class TInputImage , class TOutputImage >

virtual VectorPointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetBasisEnergyDL ( )

virtual

template<class TInputImage , class TOutputImage >

virtual double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetBasisEnergyPowerDL ( )

virtual

template<class TInputImage , class TOutputImage >

virtual double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetBasisScale ( )

virtual

template<class TInputImage , class TOutputImage >

virtual EstimationType itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetEstimationType ( )

virtual

template<class TInputImage , class TOutputImage >

virtual int itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetIndexJ ( const int  n, const int  l, const int  m  ) const

inlinevirtual

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >.

Definition at line 148 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

virtual std::vector<int> itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetIndexNLM ( const int  index ) const

inlinevirtual

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >.

Definition at line 146 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

virtual bool itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetIsOriginalBasis ( )

virtual

template<class TInputImage , class TOutputImage >

virtual L1SolverType itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetL1SolverType ( )

virtual

template<class TInputImage , class TOutputImage >

virtual double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetLambdaL1 ( )

virtual

template<class TInputImage , class TOutputImage >

virtual double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetLambdaRadial ( )

virtual

template<class TInputImage , class TOutputImage >

virtual double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetLambdaSpherical ( )

virtual

template<class TInputImage , class TOutputImage >

virtual const ScalarImageType* itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetMDImage ( ) const

virtual

template<class TInputImage , class TOutputImage >

virtual const char* itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >, and itk::GeneralizedHighOrderTensorImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

virtual VectorPointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetRegularizationWeight ( )

virtual

template<class TInputImage , class TOutputImage >

virtual const ScalarImageType* itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GetScaleImage ( ) const

virtual

template<class TInputImage , class TOutputImage >

void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::InitializeThreadedLibraries ( )

protectedvirtual

Use single thread for MKL or openmp to avoid confliction with itk threader. Otherwise it has worse performance due to thread conflication (but correct solution).

Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >.

Definition at line 213 of file itkSphericalPolarFourierEstimationImageFilter.hxx.

References utl::InitializeThreadedLibraries(), and itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::PrintSelf().

Referenced by itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData().

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template<class TInputImage , class TOutputImage >

LightObject::Pointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::InternalClone ( ) const

protected

Definition at line 118 of file itkSphericalPolarFourierEstimationImageFilter.hxx.

References itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData(), and itkShowPositionThreadedLogger.

Referenced by itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetBasisScale().

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template<class TInputImage , class TOutputImage >

bool itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::IsAdaptiveScale ( ) const

inline

Definition at line 154 of file itkSphericalPolarFourierEstimationImageFilter.h.

References itk::IsImageEmpty().

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template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::IsOriginalBasisOff ( )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::IsOriginalBasisOn ( )

virtual

template<class TInputImage , class TOutputImage >

itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::itkGetObjectMacro	(	MDImage	,
		ScalarImageType
	)

template<class TInputImage , class TOutputImage >

itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::itkGetObjectMacro	(	ScaleImage	,
		ScalarImageType
	)

template<class TInputImage , class TOutputImage >

itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::itkSetGetBooleanMacro

(

IsAnalyticalB0

)

template<class TInputImage , class TOutputImage >

itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::itkTypedefMaskedImageToImageMacro

(

Superclass

)

Convenient Typedefs.

template<class TInputImage , class TOutputImage >

static Pointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::New ( )

static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage >

void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::operator= ( const Self &  )

private

template<class TInputImage , class TOutputImage >

void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protectedvirtual

Reimplemented from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >.

Definition at line 232 of file itkSphericalPolarFourierEstimationImageFilter.hxx.

References utl::PrintUtlMatrix(), PrintVar2, and PrintVar4.

Referenced by itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::InitializeThreadedLibraries().

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template<class TInputImage , class TOutputImage >

virtual int itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::RankToDim ( const bool  is_radial = false, const int  radialRank = -1, const int  shRank = -1  ) const

inlinevirtual

from rank to dimension

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >, and itk::GeneralizedHighOrderTensorImageFilter< TInputImage, TOutputImage >.

Definition at line 143 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetB0Weight ( double  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetBasisCombinationMatrix ( MatrixPointer  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetBasisEnergyDL ( VectorPointer  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetBasisEnergyPowerDL ( double  _arg )

virtual

template<class TInputImage , class TOutputImage >

void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetBasisScale ( const double  scale )

virtual

Reimplemented in itk::SphericalPolarFourierImageFilter< TInputImage, TOutputImage >.

Definition at line 96 of file itkSphericalPolarFourierEstimationImageFilter.hxx.

References itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::InternalClone(), and itkShowPositionThreadedLogger.

Referenced by itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::ComputeScale().

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template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetEstimationType ( EstimationType  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetIsOriginalBasis ( bool  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetL1FISTASolver ( typename L1FISTASolverType::Pointer  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetL1SolverType ( L1SolverType  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetL1SpamsSolver ( typename L1SpamsSolverType::Pointer  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetLambdaL1 ( double  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetLambdaRadial ( double  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetLambdaSpherical ( double  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetMDImage ( ScalarImageType *  _arg )

virtual

Set/Get the MD image.

template<class TInputImage , class TOutputImage >

virtual void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SetScaleImage ( ScalarImageType *  _arg )

virtual

Set/Get the scale image, which is normally determined by MDImage.

template<class TInputImage , class TOutputImage >

void itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::VerifyInputParameters ( ) const

protectedvirtual

Reimplemented from itk::DiffusionModelEstimationInSphericalCoordinateImageFilter< TInputImage, TOutputImage >.

Definition at line 61 of file itkSphericalPolarFourierEstimationImageFilter.hxx.

References itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::GenerateOutputInformation(), itk::IsImageEmpty(), itkShowPositionThreadedLogger, utlGlobalException, and itk::VerifyImageInformation().

Referenced by itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::SphericalPolarFourierEstimationImageFilter().

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Member Data Documentation

template<class TInputImage , class TOutputImage >

double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_B0Weight

protected

used for artificial samples for E(0)=1

Definition at line 201 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

MatrixPointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_BasisCombinationMatrix

protected

used for learned basis (L1_DL is used)

Definition at line 192 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

VectorPointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_BasisEnergyDL

protected

energy of samples in each atom of the learned basis. (L1_DL is used)

Definition at line 194 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_BasisEnergyPowerDL

protected

power of the energy used to calculate m_RegularizationWeight. (L1_DL is used)

Definition at line 196 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

MatrixPointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_BasisMatrixForB0

protected

basis matrix for artificial b0 shell

Definition at line 203 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_BasisScale

protected

scale for radial basis

Definition at line 181 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

EstimationType itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_EstimationType

protected

Definition at line 209 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

bool itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_IsAnalyticalB0

protected

If it is true, use analytical way to ensure E(0)=1

Definition at line 199 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

bool itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_IsOriginalBasis

protected

Original SPF basis or dual SPF basis

Definition at line 218 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

L1FISTASolverType::Pointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_L1FISTASolver

protected

Definition at line 212 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

L1SolverType itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_L1SolverType

protected

Definition at line 215 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

L1SpamsSolverType::Pointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_L1SpamsSolver

protected

Definition at line 213 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

L2SolverType::Pointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_L2Solver

protected

Definition at line 211 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_LambdaL1

protected

single lambda for L1 norm regularization

Definition at line 187 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_LambdaL2

protected

single lambda for L2 norm regularization

Definition at line 189 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_LambdaRadial

protected

Definition at line 185 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

double itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_LambdaSpherical

protected

regularization parameter in sphercial and radial parts

Definition at line 184 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

ScalarImageType::Pointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_MDImage

protected

used for adaptive scale

Definition at line 206 of file itkSphericalPolarFourierEstimationImageFilter.h.

template<class TInputImage , class TOutputImage >

ScalarImageType::Pointer itk::SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >::m_ScaleImage

protected

Definition at line 207 of file itkSphericalPolarFourierEstimationImageFilter.h.

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The documentation for this class was generated from the following files:

• Modules/DiffusionModels/include/itkSphericalPolarFourierEstimationImageFilter.h
• Modules/DiffusionModels/include/itkSphericalPolarFourierEstimationImageFilter.hxx