itk::MeshFromFiberTractsFilter Class Reference

#include <itkMeshFromFiberTractsFilter.h>

Inheritance diagram for itk::MeshFromFiberTractsFilter:

Collaboration diagram for itk::MeshFromFiberTractsFilter:

Detailed Description

Compute mesh from fibers.

Author

Jian Cheng (jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om)

Definition at line 31 of file itkMeshFromFiberTractsFilter.h.

Public Types
enum	ColorSchemeType {   COLOR_NONE =0,   COLOR_FIXED,   COLOR_BY_POINT_DIRECTION,   COLOR_BY_MEAN_DIRECTION,   COLOR_BY_ENDPOINTS_DIRECTION,   COLOR_BY_IMAGE,   COLOR_BY_SCALARS,   COLOR_BY_PROPERTY }
typedef FiberTractsType::FiberPointer	FiberPointer
typedef FiberTractsType::Pointer	FiberTractsPointer
typedef FiberTracts< double >	FiberTractsType
typedef FiberTractsType::FiberType	FiberType
enum	GlyphShapeType {   GLYPH_LINE =0,   GLYPH_TUBE }
typedef vtkSmartPointer< vtkPolyData >	OutputMeshPolyDataPointer
typedef vtkPolyData	OutputMeshPolyDataType
typedef SmartPointer< Self >	Pointer
typedef MeshFromFiberTractsFilter	Self
typedef FiberType::STDVectorType	STDVectorType
typedef LightProcessObject	Superclass
typedef FiberType::VertexType	VertexType

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
const double *	GetColor () const
std::vector< int >	GetFlip () const
virtual const char *	GetNameOfClass () const
OutputMeshPolyDataPointer	GetOutput () const
	itkSetGetMacro (FiberTracts, FiberTractsPointer)
	itkSetGetMacro (ColorScheme, ColorSchemeType)
	itkSetGetMacro (ShapeMode, GlyphShapeType)
	itkSetGetMacro (TubeRadius, double)
void	SetColor (double r, double g, double b)
void	SetFlip (const int flipx, const int flipy, const int flipz)
virtual void	Update ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
LightObject::Pointer	InternalClone () const ITK_OVERRIDE
	MeshFromFiberTractsFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
	~MeshFromFiberTractsFilter ()

Protected Attributes
double	m_Color [3] ={255,0,0}
ColorSchemeType	m_ColorScheme =COLOR_BY_POINT_DIRECTION
FiberTractsPointer	m_FiberTracts = FiberTractsType::New()
std::vector< int >	m_Flip = std::vector<int>(3, 0)
OutputMeshPolyDataPointer	m_Mesh = OutputMeshPolyDataType::New()
GlyphShapeType	m_ShapeMode =GLYPH_LINE
double	m_TubeRadius =0.2

Private Member Functions
	MeshFromFiberTractsFilter (const Self &)
void	operator= (const Self &)

Member Typedef Documentation

typedef FiberTractsType::FiberPointer itk::MeshFromFiberTractsFilter::FiberPointer

Definition at line 48 of file itkMeshFromFiberTractsFilter.h.

typedef FiberTractsType::Pointer itk::MeshFromFiberTractsFilter::FiberTractsPointer

Definition at line 46 of file itkMeshFromFiberTractsFilter.h.

typedef FiberTracts<double> itk::MeshFromFiberTractsFilter::FiberTractsType

Definition at line 43 of file itkMeshFromFiberTractsFilter.h.

typedef FiberTractsType::FiberType itk::MeshFromFiberTractsFilter::FiberType

Definition at line 47 of file itkMeshFromFiberTractsFilter.h.

typedef vtkSmartPointer<vtkPolyData> itk::MeshFromFiberTractsFilter::OutputMeshPolyDataPointer

Definition at line 53 of file itkMeshFromFiberTractsFilter.h.

typedef vtkPolyData itk::MeshFromFiberTractsFilter::OutputMeshPolyDataType

Definition at line 52 of file itkMeshFromFiberTractsFilter.h.

typedef SmartPointer<Self> itk::MeshFromFiberTractsFilter::Pointer

Definition at line 37 of file itkMeshFromFiberTractsFilter.h.

typedef MeshFromFiberTractsFilter itk::MeshFromFiberTractsFilter::Self

Standard class typedefs.

Definition at line 35 of file itkMeshFromFiberTractsFilter.h.

typedef FiberType::STDVectorType itk::MeshFromFiberTractsFilter::STDVectorType

Definition at line 49 of file itkMeshFromFiberTractsFilter.h.

typedef LightProcessObject itk::MeshFromFiberTractsFilter::Superclass

Definition at line 36 of file itkMeshFromFiberTractsFilter.h.

typedef FiberType::VertexType itk::MeshFromFiberTractsFilter::VertexType

Definition at line 50 of file itkMeshFromFiberTractsFilter.h.

Member Enumeration Documentation

enum itk::MeshFromFiberTractsFilter::ColorSchemeType

Enumerator
COLOR_NONE	default color
COLOR_FIXED	fixed color
COLOR_BY_POINT_DIRECTION	by direction in each point
COLOR_BY_MEAN_DIRECTION	by mean direction in a tract
COLOR_BY_ENDPOINTS_DIRECTION	by start and end points
COLOR_BY_IMAGE	by an input image
COLOR_BY_SCALARS	by scalar
COLOR_BY_PROPERTY	by scalar

Definition at line 64 of file itkMeshFromFiberTractsFilter.h.

enum itk::MeshFromFiberTractsFilter::GlyphShapeType

enum of the possible shapes for the glyphs

Enumerator
GLYPH_LINE	lines
GLYPH_TUBE	tubes

Definition at line 56 of file itkMeshFromFiberTractsFilter.h.

Constructor & Destructor Documentation

itk::MeshFromFiberTractsFilter::MeshFromFiberTractsFilter ( )

inlineprotected

Definition at line 119 of file itkMeshFromFiberTractsFilter.h.

itk::MeshFromFiberTractsFilter::~MeshFromFiberTractsFilter ( )

inlineprotected

Definition at line 120 of file itkMeshFromFiberTractsFilter.h.

References ITK_OVERRIDE.

itk::MeshFromFiberTractsFilter::MeshFromFiberTractsFilter ( const Self &  )

private

Member Function Documentation

virtual::itk::LightObject::Pointer itk::MeshFromFiberTractsFilter::CreateAnother

(

void

)

const

const double* itk::MeshFromFiberTractsFilter::GetColor ( ) const

inline

Definition at line 95 of file itkMeshFromFiberTractsFilter.h.

std::vector<int> itk::MeshFromFiberTractsFilter::GetFlip ( ) const

inline

Definition at line 104 of file itkMeshFromFiberTractsFilter.h.

virtual const char* itk::MeshFromFiberTractsFilter::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

OutputMeshPolyDataPointer itk::MeshFromFiberTractsFilter::GetOutput ( ) const

inline

Definition at line 112 of file itkMeshFromFiberTractsFilter.h.

LightObject::Pointer itk::MeshFromFiberTractsFilter::InternalClone ( ) const

protected

Definition at line 32 of file itkMeshFromFiberTractsFilter.hxx.

References Update().

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itk::MeshFromFiberTractsFilter::itkSetGetMacro	(	FiberTracts	,
		FiberTractsPointer
	)

itk::MeshFromFiberTractsFilter::itkSetGetMacro	(	ColorScheme	,
		ColorSchemeType
	)

itk::MeshFromFiberTractsFilter::itkSetGetMacro	(	ShapeMode	,
		GlyphShapeType
	)

itk::MeshFromFiberTractsFilter::itkSetGetMacro	(	TubeRadius	,
		double
	)

static Pointer itk::MeshFromFiberTractsFilter::New ( )

static

Method for creation through the object factory.

void itk::MeshFromFiberTractsFilter::operator= ( const Self &  )

private

void itk::MeshFromFiberTractsFilter::PrintSelf ( std::ostream &  os, Indent  indent  ) const

inlineprotected

Definition at line 124 of file itkMeshFromFiberTractsFilter.h.

References PrintVar, and utl::PrintVector().

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void itk::MeshFromFiberTractsFilter::SetColor ( double  r, double  g, double  b  )

inline

Definition at line 91 of file itkMeshFromFiberTractsFilter.h.

void itk::MeshFromFiberTractsFilter::SetFlip ( const int  flipx, const int  flipy, const int  flipz  )

inline

Definition at line 100 of file itkMeshFromFiberTractsFilter.h.

void itk::MeshFromFiberTractsFilter::Update ( )

virtual

Does the real work.

Definition at line 57 of file itkMeshFromFiberTractsFilter.hxx.

References utl::FlipVector(), utl::NDArrayBase< T, 1 >::GetTwoNorm(), utlGlobalException, utlPrintVar, and utl::VectorToVector().

Referenced by InternalClone().

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Member Data Documentation

double itk::MeshFromFiberTractsFilter::m_Color[3] ={255,0,0}

protected

Definition at line 142 of file itkMeshFromFiberTractsFilter.h.

ColorSchemeType itk::MeshFromFiberTractsFilter::m_ColorScheme =COLOR_BY_POINT_DIRECTION

protected

Definition at line 136 of file itkMeshFromFiberTractsFilter.h.

FiberTractsPointer itk::MeshFromFiberTractsFilter::m_FiberTracts = FiberTractsType::New()

protected

Definition at line 134 of file itkMeshFromFiberTractsFilter.h.

std::vector<int> itk::MeshFromFiberTractsFilter::m_Flip = std::vector<int>(3, 0)

protected

flips in x/y/z-axis. 0 means no flip, 1 means flip

Definition at line 147 of file itkMeshFromFiberTractsFilter.h.

OutputMeshPolyDataPointer itk::MeshFromFiberTractsFilter::m_Mesh = OutputMeshPolyDataType::New()

protected

Definition at line 140 of file itkMeshFromFiberTractsFilter.h.

GlyphShapeType itk::MeshFromFiberTractsFilter::m_ShapeMode =GLYPH_LINE

protected

Definition at line 138 of file itkMeshFromFiberTractsFilter.h.

double itk::MeshFromFiberTractsFilter::m_TubeRadius =0.2

protected

Definition at line 144 of file itkMeshFromFiberTractsFilter.h.

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The documentation for this class was generated from the following files:

• Modules/Visualization/include/itkMeshFromFiberTractsFilter.h
• Modules/Visualization/include/itkMeshFromFiberTractsFilter.hxx