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itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage > Class Template Reference
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#include <itkProfileFromSPFImageFilter.h>

+ Inheritance diagram for itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >:
+ Collaboration diagram for itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >

Calculate DWI/EAP profile from SPF coefficients.

Author
Jian Cheng (JC), jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om

Definition at line 35 of file itkProfileFromSPFImageFilter.h.

Public Types

typedef Superclass::BasisType BasisType
 
typedef SmartPointer< const Self > ConstPointer
 
typedef Superclass::MatrixPointer MatrixPointer
 
typedef Superclass::MatrixType MatrixType
 
typedef SmartPointer< Self > Pointer
 
typedef ProfileFromSPFImageFilter Self
 
typedef Superclass::STDVectorPointer STDVectorPointer
 
typedef Superclass::STDVectorType STDVectorType
 
typedef FeaturesFromSPFImageFilter< TInputImage, TOutputImage > Superclass
 
typedef Superclass::VectorPointer VectorPointer
 
typedef Superclass::VectorType VectorType
 
- Public Types inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
enum  BasisType {
  SPF =0,
  DSPF
}
 
typedef SmartPointer< const Self > ConstPointer
 
typedef utl_shared_ptr< MatrixType > MatrixPointer
 
typedef utl::NDArray< double, 2 > MatrixType
 
typedef SmartPointer< Self > Pointer
 
typedef FeaturesFromSPFImageFilter Self
 
typedef SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage > SPFIFilterBaseType
 
typedef utl_shared_ptr< STDVectorType > STDVectorPointer
 
typedef std::vector< double > STDVectorType
 
typedef MaskedImageToImageFilter< TInputImage, TOutputImage > Superclass
 
typedef utl_shared_ptr< VectorType > VectorPointer
 
typedef utl::NDArray< double, 1 > VectorType
 
- Public Types inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self > ConstPointer
 
typedef InputImageType::ConstPointer InputImageConstPointer
 
typedef InputImageType::IndexType InputImageIndexType
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef InputImageType::SizeType InputImageSizeType
 
typedef InputImageType::SpacingType InputImageSpacingType
 
typedef TInputImage InputImageType
 
typedef LoggerType::Pointer LoggerPointer
 
typedef ThreadLogger LoggerType
 
typedef utl_shared_ptr< LoggerVectorType > LoggerVectorPointer
 
typedef std::vector< LoggerPointer > LoggerVectorType
 
typedef MaskImageType::Pointer MaskImagePointer
 
typedef Image< double, 3 > MaskImageType
 
typedef OutputImageType::IndexType OutputImageIndexType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef OutputImageType::SizeType OutputImageSizeType
 
typedef OutputImageType::SpacingType OutputImageSpacingType
 
typedef TOutputImage OutputImageType
 
typedef SmartPointer< Self > Pointer
 
typedef MaskedImageToImageFilter Self
 
typedef ImageToImageFilter< TInputImage, TOutputImage > Superclass
 

Public Member Functions

void ComputeSPFToFeatureTransform () ITK_OVERRIDE
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const char * GetNameOfClass () const
 
virtual double GetRadius ()
 
virtual STDVectorPointer GetRadiusVector ()
 
 itkTypedefMaskedImageToImageMacro (Superclass)
 
virtual void SetRadius (double _arg)
 
virtual void SetRadiusVector (STDVectorPointer _arg)
 
- Public Member Functions inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
double ComputeScale (const bool setScale=true)
 
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual double GetBasisScale ()
 
virtual BasisType GetBasisType ()
 
virtual bool GetIsFourier ()
 
virtual bool GetIsInQSpace ()
 
virtual double GetMD0 ()
 
virtual MatrixPointer GetOrientations ()
 
virtual int GetRadialRank ()
 
virtual const ScalarImageType * GetScaleImage () const
 
virtual int GetSHRank ()
 
virtual MatrixPointer GetSPFToFeatureTransform ()
 
virtual double GetTau ()
 
virtual void IsFourierOff ()
 
virtual void IsFourierOn ()
 
virtual void IsInQSpaceOff ()
 
virtual void IsInQSpaceOn ()
 
 itkGetObjectMacro (ScaleImage, ScalarImageType)
 
 itkTypedefMaskedImageToImageMacro (Superclass)
 
virtual void SetBasisScale (const double scale)
 
virtual void SetBasisType (BasisType _arg)
 
virtual void SetIsFourier (bool _arg)
 
virtual void SetIsInQSpace (bool _arg)
 
virtual void SetMD0 (double _arg)
 
virtual void SetOrientations (MatrixPointer _arg)
 
virtual void SetRadialRank (int _arg)
 
void SetScaleImage (const ScalarImagePointer &scaleImage)
 
virtual void SetSHRank (int _arg)
 
virtual void SetTau (double _arg)
 
- Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
virtual ::itk::LightObject::Pointer CreateAnother (void) const
 
virtual const LoggerType * GetLogger () const
 
virtual const MaskImageType * GetMaskImage () const
 
bool IsMaskUsed ()
 
 itkGetObjectMacro (MaskImage, MaskImageType)
 
 itkGetObjectMacro (Logger, LoggerType)
 
 itkSetGetMacro (LogLevel, int)
 
virtual void SetLogger (LoggerType *_arg)
 
virtual void SetMaskImage (MaskImageType *_arg)
 
void SetMaskImage (const std::string &file)
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
static Pointer New ()
 
- Static Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static Pointer New ()
 

Protected Member Functions

void BeforeThreadedGenerateData () ITK_OVERRIDE
 
void GenerateOutputInformation () ITK_OVERRIDE
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
void PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE
 
 ProfileFromSPFImageFilter ()
 
void ThreadedGenerateData (const typename TOutputImage::RegionType &outputRegionForThread, ThreadIdType threadId) ITK_OVERRIDE
 
void VerifyInputParameters () const ITK_OVERRIDE
 
virtual ~ProfileFromSPFImageFilter ()
 
- Protected Member Functions inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
void BeforeThreadedGenerateData () ITK_OVERRIDE
 
 FeaturesFromSPFImageFilter ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
void SetSPFIEstimator ()
 
virtual ~FeaturesFromSPFImageFilter ()
 
- Protected Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
void CreateLoggerVector ()
 
virtual void InitializeThreadedLibraries ()
 
LightObject::Pointer InternalClone () const ITK_OVERRIDE
 
 MaskedImageToImageFilter ()
 
std::string ThreadIDToString () const
 
virtual void VerifyMaskInformation () const
 
void WriteLogger (const std::string &str, const LoggerBase::PriorityLevelType level=LoggerBase::DEBUG) const
 
virtual ~MaskedImageToImageFilter ()
 

Private Member Functions

void operator= (const Self &)
 
 ProfileFromSPFImageFilter (const Self &)
 

Private Attributes

double m_Radius
 
STDVectorPointer m_RadiusVector
 

Additional Inherited Members

- Static Public Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 
- Protected Attributes inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
double m_BasisScale
 
BasisType m_BasisType
 
bool m_IsFourier
 
bool m_IsInQSpace
 
double m_MD0
 
MatrixPointer m_Orientations
 
int m_RadialRank
 
ScalarImageType::Pointer m_ScaleImage
 
int m_SHRank
 
SPFIFilterBaseType::Pointer m_SPFIEstimator
 
MatrixPointer m_SPFToFeatureTransform
 
double m_Tau
 
- Protected Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
LoggerPointer m_Logger
 
LoggerVectorPointer m_LoggerVector
 
int m_LogLevel
 
MaskImagePointer m_MaskImage
 
int m_ThreadID
 

Member Typedef Documentation

template<class TInputImage , class TOutputImage >
typedef Superclass::BasisType itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::BasisType

Definition at line 57 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef SmartPointer<const Self> itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 43 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::MatrixPointer itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::MatrixPointer

Definition at line 54 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::MatrixType itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::MatrixType

Definition at line 53 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef SmartPointer<Self> itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::Pointer

Definition at line 42 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef ProfileFromSPFImageFilter itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 40 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::STDVectorPointer itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::STDVectorPointer

Definition at line 59 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::STDVectorType itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::STDVectorType

Definition at line 58 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef FeaturesFromSPFImageFilter<TInputImage,TOutputImage> itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::Superclass

Definition at line 41 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::VectorPointer itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::VectorPointer

Definition at line 56 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
typedef Superclass::VectorType itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::VectorType

Definition at line 55 of file itkProfileFromSPFImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >
itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::ProfileFromSPFImageFilter ( )
inlineprotected

Definition at line 71 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
virtual itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::~ProfileFromSPFImageFilter ( )
inlineprotectedvirtual

Definition at line 76 of file itkProfileFromSPFImageFilter.h.

References ITK_OVERRIDE.

template<class TInputImage , class TOutputImage >
itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::ProfileFromSPFImageFilter ( const Self &  )
private

Member Function Documentation

template<class TInputImage , class TOutputImage >
void itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData ( )
protected

Definition at line 177 of file itkProfileFromSPFImageFilter.hxx.

template<class TInputImage , class TOutputImage >
void itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::ComputeSPFToFeatureTransform ( )
virtual

Reimplemented from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >.

Definition at line 84 of file itkProfileFromSPFImageFilter.hxx.

References utlException, and utlShowPosition.

Referenced by itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::InternalClone().

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template<class TInputImage , class TOutputImage >
virtual::itk::LightObject::Pointer itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::CreateAnother ( void  ) const
template<class TInputImage , class TOutputImage >
void itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::GenerateOutputInformation ( void  )
protected

Definition at line 34 of file itkProfileFromSPFImageFilter.hxx.

References utl::RankToDimSH(), utlGlobalException, utlShowPosition, and itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::VerifyInputParameters().

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template<class TInputImage , class TOutputImage >
virtual const char* itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods)

Reimplemented from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >
virtual double itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::GetRadius ( )
virtual
template<class TInputImage , class TOutputImage >
virtual STDVectorPointer itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::GetRadiusVector ( )
virtual
template<class TInputImage , class TOutputImage >
LightObject::Pointer itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::InternalClone ( ) const
protected

Definition at line 67 of file itkProfileFromSPFImageFilter.hxx.

References itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::ComputeSPFToFeatureTransform().

Referenced by itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::VerifyInputParameters().

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template<class TInputImage , class TOutputImage >
itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::itkTypedefMaskedImageToImageMacro ( Superclass  )
template<class TInputImage , class TOutputImage >
static Pointer itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::New ( )
static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage >
void itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::operator= ( const Self &  )
private
template<class TInputImage , class TOutputImage >
void itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
protectedvirtual

Reimplemented from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >.

Definition at line 290 of file itkProfileFromSPFImageFilter.hxx.

template<class TInputImage , class TOutputImage >
virtual void itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::SetRadius ( double  _arg)
virtual
template<class TInputImage , class TOutputImage >
virtual void itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::SetRadiusVector ( STDVectorPointer  _arg)
virtual
template<class TInputImage , class TOutputImage >
void itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::ThreadedGenerateData ( const typename TOutputImage::RegionType &  outputRegionForThread,
ThreadIdType  threadId 
)
protected

Definition at line 214 of file itkProfileFromSPFImageFilter.hxx.

template<class TInputImage , class TOutputImage >
void itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::VerifyInputParameters ( ) const
protectedvirtual

Reimplemented from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >.

Definition at line 57 of file itkProfileFromSPFImageFilter.hxx.

References itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::InternalClone(), utlGlobalException, and utlShowPosition.

Referenced by itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::GenerateOutputInformation().

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Member Data Documentation

template<class TInputImage , class TOutputImage >
double itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::m_Radius
private

b value or r value, which is dependent on m_IsInQSpace

Definition at line 92 of file itkProfileFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage >
STDVectorPointer itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >::m_RadiusVector
private

If it is set, the output will be samples, not SH coefficients

Definition at line 95 of file itkProfileFromSPFImageFilter.h.

The documentation for this class was generated from the following files:
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