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DMRITool
v0.1.1-139-g860d86b4
Diffusion MRI Tool
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#include <itkFeaturesFromSPFImageFilter.h>
Inheritance diagram for itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >: Collaboration diagram for itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >:Compute some features (DWI/EAP profile, ODFs, scalar indices) from SPF coefficients.
This filter is templated over the input image type and the output image type.
Definition at line 40 of file itkFeaturesFromSPFImageFilter.h.
Public Types | |
| enum | BasisType { SPF =0, DSPF } |
| typedef SmartPointer< const Self > | ConstPointer |
| typedef utl_shared_ptr< MatrixType > | MatrixPointer |
| typedef utl::NDArray< double, 2 > | MatrixType |
| typedef SmartPointer< Self > | Pointer |
| typedef FeaturesFromSPFImageFilter | Self |
| typedef SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage > | SPFIFilterBaseType |
| typedef utl_shared_ptr< STDVectorType > | STDVectorPointer |
| typedef std::vector< double > | STDVectorType |
| typedef MaskedImageToImageFilter< TInputImage, TOutputImage > | Superclass |
| typedef utl_shared_ptr< VectorType > | VectorPointer |
| typedef utl::NDArray< double, 1 > | VectorType |
| Public Types inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage > | |
| typedef SmartPointer< const Self > | ConstPointer |
| typedef InputImageType::ConstPointer | InputImageConstPointer |
| typedef InputImageType::IndexType | InputImageIndexType |
| typedef InputImageType::PixelType | InputImagePixelType |
| typedef InputImageType::Pointer | InputImagePointer |
| typedef InputImageType::RegionType | InputImageRegionType |
| typedef InputImageType::SizeType | InputImageSizeType |
| typedef InputImageType::SpacingType | InputImageSpacingType |
| typedef TInputImage | InputImageType |
| typedef LoggerType::Pointer | LoggerPointer |
| typedef ThreadLogger | LoggerType |
| typedef utl_shared_ptr< LoggerVectorType > | LoggerVectorPointer |
| typedef std::vector< LoggerPointer > | LoggerVectorType |
| typedef MaskImageType::Pointer | MaskImagePointer |
| typedef Image< double, 3 > | MaskImageType |
| typedef OutputImageType::IndexType | OutputImageIndexType |
| typedef OutputImageType::PixelType | OutputImagePixelType |
| typedef OutputImageType::Pointer | OutputImagePointer |
| typedef OutputImageType::RegionType | OutputImageRegionType |
| typedef OutputImageType::SizeType | OutputImageSizeType |
| typedef OutputImageType::SpacingType | OutputImageSpacingType |
| typedef TOutputImage | OutputImageType |
| typedef SmartPointer< Self > | Pointer |
| typedef MaskedImageToImageFilter | Self |
| typedef ImageToImageFilter< TInputImage, TOutputImage > | Superclass |
Public Member Functions | |
| double | ComputeScale (const bool setScale=true) |
| virtual void | ComputeSPFToFeatureTransform () |
| virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
| virtual double | GetBasisScale () |
| virtual BasisType | GetBasisType () |
| virtual bool | GetIsFourier () |
| virtual bool | GetIsInQSpace () |
| virtual double | GetMD0 () |
| virtual const char * | GetNameOfClass () const |
| virtual MatrixPointer | GetOrientations () |
| virtual int | GetRadialRank () |
| virtual const ScalarImageType * | GetScaleImage () const |
| virtual int | GetSHRank () |
| virtual MatrixPointer | GetSPFToFeatureTransform () |
| virtual double | GetTau () |
| virtual void | IsFourierOff () |
| virtual void | IsFourierOn () |
| virtual void | IsInQSpaceOff () |
| virtual void | IsInQSpaceOn () |
| itkGetObjectMacro (ScaleImage, ScalarImageType) | |
| itkTypedefMaskedImageToImageMacro (Superclass) | |
| virtual void | SetBasisScale (const double scale) |
| virtual void | SetBasisType (BasisType _arg) |
| virtual void | SetIsFourier (bool _arg) |
| virtual void | SetIsInQSpace (bool _arg) |
| virtual void | SetMD0 (double _arg) |
| virtual void | SetOrientations (MatrixPointer _arg) |
| virtual void | SetRadialRank (int _arg) |
| void | SetScaleImage (const ScalarImagePointer &scaleImage) |
| virtual void | SetSHRank (int _arg) |
| virtual void | SetTau (double _arg) |
| Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage > | |
| virtual ::itk::LightObject::Pointer | CreateAnother (void) const |
| virtual const LoggerType * | GetLogger () const |
| virtual const MaskImageType * | GetMaskImage () const |
| bool | IsMaskUsed () |
| itkGetObjectMacro (MaskImage, MaskImageType) | |
| itkGetObjectMacro (Logger, LoggerType) | |
| itkSetGetMacro (LogLevel, int) | |
| virtual void | SetLogger (LoggerType *_arg) |
| virtual void | SetMaskImage (MaskImageType *_arg) |
| void | SetMaskImage (const std::string &file) |
Static Public Member Functions | |
| static Pointer | New () |
| Static Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage > | |
| static Pointer | New () |
Protected Member Functions | |
| void | BeforeThreadedGenerateData () ITK_OVERRIDE |
| FeaturesFromSPFImageFilter () | |
| LightObject::Pointer | InternalClone () const ITK_OVERRIDE |
| void | PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE |
| void | SetSPFIEstimator () |
| virtual void | VerifyInputParameters () const ITK_OVERRIDE |
| virtual | ~FeaturesFromSPFImageFilter () |
| Protected Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage > | |
| void | CreateLoggerVector () |
| virtual void | InitializeThreadedLibraries () |
| LightObject::Pointer | InternalClone () const ITK_OVERRIDE |
| MaskedImageToImageFilter () | |
| std::string | ThreadIDToString () const |
| virtual void | VerifyMaskInformation () const |
| void | WriteLogger (const std::string &str, const LoggerBase::PriorityLevelType level=LoggerBase::DEBUG) const |
| virtual | ~MaskedImageToImageFilter () |
Protected Attributes | |
| double | m_BasisScale |
| BasisType | m_BasisType |
| bool | m_IsFourier |
| bool | m_IsInQSpace |
| double | m_MD0 |
| MatrixPointer | m_Orientations |
| int | m_RadialRank |
| ScalarImageType::Pointer | m_ScaleImage |
| int | m_SHRank |
| SPFIFilterBaseType::Pointer | m_SPFIEstimator |
| MatrixPointer | m_SPFToFeatureTransform |
| double | m_Tau |
| Protected Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage > | |
| LoggerPointer | m_Logger |
| LoggerVectorPointer | m_LoggerVector |
| int | m_LogLevel |
| MaskImagePointer | m_MaskImage |
| int | m_ThreadID |
Private Member Functions | |
| FeaturesFromSPFImageFilter (const Self &) | |
| void | operator= (const Self &) |
Additional Inherited Members | |
| Static Public Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage > | |
| static const unsigned int | InputImageDimension |
| static const unsigned int | OutputImageDimension |
| typedef SmartPointer<const Self> itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::ConstPointer |
Definition at line 48 of file itkFeaturesFromSPFImageFilter.h.
| typedef utl_shared_ptr<MatrixType> itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::MatrixPointer |
Definition at line 59 of file itkFeaturesFromSPFImageFilter.h.
| typedef utl::NDArray<double,2> itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::MatrixType |
Definition at line 58 of file itkFeaturesFromSPFImageFilter.h.
| typedef SmartPointer<Self> itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::Pointer |
Definition at line 47 of file itkFeaturesFromSPFImageFilter.h.
| typedef FeaturesFromSPFImageFilter itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::Self |
Standard class typedefs.
Definition at line 45 of file itkFeaturesFromSPFImageFilter.h.
| typedef SphericalPolarFourierEstimationImageFilter<TInputImage, TOutputImage> itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::SPFIFilterBaseType |
Definition at line 65 of file itkFeaturesFromSPFImageFilter.h.
| typedef utl_shared_ptr<STDVectorType > itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::STDVectorPointer |
Definition at line 63 of file itkFeaturesFromSPFImageFilter.h.
| typedef std::vector<double> itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::STDVectorType |
Definition at line 62 of file itkFeaturesFromSPFImageFilter.h.
| typedef MaskedImageToImageFilter<TInputImage,TOutputImage> itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::Superclass |
Definition at line 46 of file itkFeaturesFromSPFImageFilter.h.
| typedef utl_shared_ptr<VectorType> itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::VectorPointer |
Definition at line 61 of file itkFeaturesFromSPFImageFilter.h.
| typedef utl::NDArray<double,1> itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::VectorType |
Definition at line 60 of file itkFeaturesFromSPFImageFilter.h.
| enum itk::FeaturesFromSPFImageFilter::BasisType |
| Enumerator | |
|---|---|
| SPF | |
| DSPF | |
Definition at line 67 of file itkFeaturesFromSPFImageFilter.h.
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Definition at line 30 of file itkFeaturesFromSPFImageFilter.hxx.
References itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::ComputeScale(), and ONE_OVER_4_PI_2.
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Definition at line 117 of file itkFeaturesFromSPFImageFilter.h.
References ITK_OVERRIDE.
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Definition at line 145 of file itkFeaturesFromSPFImageFilter.hxx.
References itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::SetSPFIEstimator().
Referenced by itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::InternalClone().
Here is the call graph for this function: Here is the caller graph for this function:| double itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::ComputeScale | ( | const bool | setScale = true | ) |
Definition at line 52 of file itkFeaturesFromSPFImageFilter.hxx.
References M_PI, and itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::SetBasisScale().
Referenced by itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::FeaturesFromSPFImageFilter().
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Reimplemented in itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >, and itk::ODFFromSPFImageFilter< TInputImage, TOutputImage >.
Definition at line 112 of file itkFeaturesFromSPFImageFilter.h.
| virtual::itk::LightObject::Pointer itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::CreateAnother | ( | void | ) | const |
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Run-time type information (and related methods)
Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >.
Reimplemented in itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >, itk::ODFFromSPFImageFilter< TInputImage, TOutputImage >, and itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >.
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Definition at line 112 of file itkFeaturesFromSPFImageFilter.hxx.
References itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData().
Referenced by itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::VerifyInputParameters().
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| itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::itkGetObjectMacro | ( | ScaleImage | , |
| ScalarImageType | |||
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| itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::itkTypedefMaskedImageToImageMacro | ( | Superclass | ) |
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Method for creation through the object factory.
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Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >.
Reimplemented in itk::ODFFromSPFImageFilter< TInputImage, TOutputImage >, itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >, and itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >.
Definition at line 171 of file itkFeaturesFromSPFImageFilter.hxx.
References itk::IsImageEmpty(), and utl::PrintUtlMatrix().
Referenced by itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::SetSPFIEstimator().
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Definition at line 67 of file itkFeaturesFromSPFImageFilter.hxx.
References itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::SetScaleImage().
Referenced by itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::ComputeScale().
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for dwi/eap profile
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| void itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::SetScaleImage | ( | const ScalarImagePointer & | scaleImage | ) |
Set/Get the scale image, which is normally determined by MDImage.
Definition at line 87 of file itkFeaturesFromSPFImageFilter.hxx.
References itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::VerifyInputParameters().
Referenced by itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::SetBasisScale().
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Definition at line 154 of file itkFeaturesFromSPFImageFilter.hxx.
References itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::PrintSelf().
Referenced by itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData().
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Reimplemented from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >.
Reimplemented in itk::ProfileFromSPFImageFilter< TInputImage, TOutputImage >, itk::ODFFromSPFImageFilter< TInputImage, TOutputImage >, and itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >.
Definition at line 101 of file itkFeaturesFromSPFImageFilter.hxx.
References itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::InternalClone(), utlGlobalException, and utlSAGlobalException.
Referenced by itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >::SetScaleImage().
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Definition at line 130 of file itkFeaturesFromSPFImageFilter.h.
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Definition at line 144 of file itkFeaturesFromSPFImageFilter.h.
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for profile
Definition at line 141 of file itkFeaturesFromSPFImageFilter.h.
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the basis is in qspace or in the fourier space
Definition at line 138 of file itkFeaturesFromSPFImageFilter.h.
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Definition at line 131 of file itkFeaturesFromSPFImageFilter.h.
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Orientaitons in spherical format. If it is set, the output will be samples, not SH coefficients
Definition at line 147 of file itkFeaturesFromSPFImageFilter.h.
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Definition at line 134 of file itkFeaturesFromSPFImageFilter.h.
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Definition at line 135 of file itkFeaturesFromSPFImageFilter.h.
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Definition at line 133 of file itkFeaturesFromSPFImageFilter.h.
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Definition at line 149 of file itkFeaturesFromSPFImageFilter.h.
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Definition at line 143 of file itkFeaturesFromSPFImageFilter.h.
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Definition at line 132 of file itkFeaturesFromSPFImageFilter.h.
1.8.11
