#include <itkScalarMapFromSPFImageFilter.h>

Inheritance diagram for itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage = Image<double,3>>
class itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >

calculate ODFs from SPF coefficients

Author: Jian Cheng (JC), jian..nosp@m.chen.nosp@m.g.198.nosp@m.3@gm.nosp@m.ail.c.nosp@m.om

Definition at line 29 of file itkScalarMapFromSPFImageFilter.h.

Public Types
typedef Superclass::BasisType	BasisType

typedef SmartPointer< const Self >	ConstPointer

enum	MapType { RTO =0, MSD, PFA }

typedef Superclass::MatrixPointer	MatrixPointer

typedef Superclass::MatrixType	MatrixType

typedef SmartPointer< Self >	Pointer

typedef ScalarMapFromSPFImageFilter	Self

typedef Superclass::STDVectorPointer	STDVectorPointer

typedef Superclass::STDVectorType	STDVectorType

typedef FeaturesFromSPFImageFilter< TInputImage, TOutputImage >	Superclass

typedef Superclass::VectorPointer	VectorPointer

typedef Superclass::VectorType	VectorType

Public Types inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
enum	BasisType { SPF =0, DSPF }

typedef SmartPointer< const Self >	ConstPointer

typedef utl_shared_ptr< MatrixType >	MatrixPointer

typedef utl::NDArray< double, 2 >	MatrixType

typedef SmartPointer< Self >	Pointer

typedef FeaturesFromSPFImageFilter	Self

typedef SphericalPolarFourierEstimationImageFilter< TInputImage, TOutputImage >	SPFIFilterBaseType

typedef utl_shared_ptr< STDVectorType >	STDVectorPointer

typedef std::vector< double >	STDVectorType

typedef MaskedImageToImageFilter< TInputImage, TOutputImage >	Superclass

typedef utl_shared_ptr< VectorType >	VectorPointer

typedef utl::NDArray< double, 1 >	VectorType

Public Types inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::IndexType	InputImageIndexType

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef InputImageType::SizeType	InputImageSizeType

typedef InputImageType::SpacingType	InputImageSpacingType

typedef TInputImage	InputImageType

typedef LoggerType::Pointer	LoggerPointer

typedef ThreadLogger	LoggerType

typedef utl_shared_ptr< LoggerVectorType >	LoggerVectorPointer

typedef std::vector< LoggerPointer >	LoggerVectorType

typedef MaskImageType::Pointer	MaskImagePointer

typedef Image< double, 3 >	MaskImageType

typedef OutputImageType::IndexType	OutputImageIndexType

typedef OutputImageType::PixelType	OutputImagePixelType

typedef OutputImageType::Pointer	OutputImagePointer

typedef OutputImageType::RegionType	OutputImageRegionType

typedef OutputImageType::SizeType	OutputImageSizeType

typedef OutputImageType::SpacingType	OutputImageSpacingType

typedef TOutputImage	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef MaskedImageToImageFilter	Self

typedef ImageToImageFilter< TInputImage, TOutputImage >	Superclass

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual MapType	GetMapType ()

virtual const char *	GetNameOfClass () const

	itkTypedefMaskedImageToImageMacro (Superclass)

virtual void	SetMapType (MapType _arg)

Public Member Functions inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
double	ComputeScale (const bool setScale=true)

virtual void	ComputeSPFToFeatureTransform ()

virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual double	GetBasisScale ()

virtual BasisType	GetBasisType ()

virtual bool	GetIsFourier ()

virtual bool	GetIsInQSpace ()

virtual double	GetMD0 ()

virtual MatrixPointer	GetOrientations ()

virtual int	GetRadialRank ()

virtual const ScalarImageType *	GetScaleImage () const

virtual int	GetSHRank ()

virtual MatrixPointer	GetSPFToFeatureTransform ()

virtual double	GetTau ()

virtual void	IsFourierOff ()

virtual void	IsFourierOn ()

virtual void	IsInQSpaceOff ()

virtual void	IsInQSpaceOn ()

	itkGetObjectMacro (ScaleImage, ScalarImageType)

	itkTypedefMaskedImageToImageMacro (Superclass)

virtual void	SetBasisScale (const double scale)

virtual void	SetBasisType (BasisType _arg)

virtual void	SetIsFourier (bool _arg)

virtual void	SetIsInQSpace (bool _arg)

virtual void	SetMD0 (double _arg)

virtual void	SetOrientations (MatrixPointer _arg)

virtual void	SetRadialRank (int _arg)

void	SetScaleImage (const ScalarImagePointer &scaleImage)

virtual void	SetSHRank (int _arg)

virtual void	SetTau (double _arg)

Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
virtual ::itk::LightObject::Pointer	CreateAnother (void) const

virtual const LoggerType *	GetLogger () const

virtual const MaskImageType *	GetMaskImage () const

bool	IsMaskUsed ()

	itkGetObjectMacro (MaskImage, MaskImageType)

	itkGetObjectMacro (Logger, LoggerType)

	itkSetGetMacro (LogLevel, int)

virtual void	SetLogger (LoggerType *_arg)

virtual void	SetMaskImage (MaskImageType *_arg)

void	SetMaskImage (const std::string &file)

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
static Pointer	New ()

Static Public Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static Pointer	New ()

Protected Member Functions
void	BeforeThreadedGenerateData () ITK_OVERRIDE

void	GenerateOutputInformation () ITK_OVERRIDE

LightObject::Pointer	InternalClone () const ITK_OVERRIDE

void	PrintSelf (std::ostream &os, Indent indent) const ITK_OVERRIDE

	ScalarMapFromSPFImageFilter ()

void	ThreadedGenerateData (const typename TOutputImage::RegionType &outputRegionForThread, ThreadIdType threadId) ITK_OVERRIDE

void	VerifyInputParameters () const ITK_OVERRIDE

virtual	~ScalarMapFromSPFImageFilter ()

Protected Member Functions inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
void	BeforeThreadedGenerateData () ITK_OVERRIDE

	FeaturesFromSPFImageFilter ()

LightObject::Pointer	InternalClone () const ITK_OVERRIDE

void	SetSPFIEstimator ()

virtual	~FeaturesFromSPFImageFilter ()

Protected Member Functions inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
void	CreateLoggerVector ()

virtual void	InitializeThreadedLibraries ()

LightObject::Pointer	InternalClone () const ITK_OVERRIDE

	MaskedImageToImageFilter ()

std::string	ThreadIDToString () const

virtual void	VerifyMaskInformation () const

void	WriteLogger (const std::string &str, const LoggerBase::PriorityLevelType level=LoggerBase::DEBUG) const

virtual	~MaskedImageToImageFilter ()

Protected Attributes
MapType	m_MapType

VectorType	m_SumWeight

Protected Attributes inherited from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >
double	m_BasisScale

BasisType	m_BasisType

bool	m_IsFourier

bool	m_IsInQSpace

double	m_MD0

MatrixPointer	m_Orientations

int	m_RadialRank

ScalarImageType::Pointer	m_ScaleImage

int	m_SHRank

SPFIFilterBaseType::Pointer	m_SPFIEstimator

MatrixPointer	m_SPFToFeatureTransform

double	m_Tau

Protected Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
LoggerPointer	m_Logger

LoggerVectorPointer	m_LoggerVector

int	m_LogLevel

MaskImagePointer	m_MaskImage

int	m_ThreadID

Private Member Functions
void	operator= (const Self &)

	ScalarMapFromSPFImageFilter (const Self &)

Additional Inherited Members
Static Public Attributes inherited from itk::MaskedImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension

static const unsigned int	OutputImageDimension

Member Typedef Documentation

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef Superclass::BasisType itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::BasisType

Definition at line 51 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef SmartPointer<const Self> itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 37 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef Superclass::MatrixPointer itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::MatrixPointer

Definition at line 48 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef Superclass::MatrixType itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::MatrixType

Definition at line 47 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef SmartPointer<Self> itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::Pointer

Definition at line 36 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef ScalarMapFromSPFImageFilter itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 34 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef Superclass::STDVectorPointer itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::STDVectorPointer

Definition at line 53 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef Superclass::STDVectorType itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::STDVectorType

Definition at line 52 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef FeaturesFromSPFImageFilter<TInputImage,TOutputImage> itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::Superclass

Definition at line 35 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef Superclass::VectorPointer itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::VectorPointer

Definition at line 50 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

typedef Superclass::VectorType itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::VectorType

Definition at line 49 of file itkScalarMapFromSPFImageFilter.h.

Member Enumeration Documentation

template<class TInputImage , class TOutputImage = Image<double,3>>

enum itk::ScalarMapFromSPFImageFilter::MapType

Enumerator
RTO	return to origin probability
MSD	Mean Squared Displacement
PFA	generalized propagator FA for 3D EAP

Definition at line 56 of file itkScalarMapFromSPFImageFilter.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage = Image<double,3>>

itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::ScalarMapFromSPFImageFilter ( )

inlineprotected

Definition at line 70 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

virtual itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::~ScalarMapFromSPFImageFilter ( )

inlineprotectedvirtual

Definition at line 74 of file itkScalarMapFromSPFImageFilter.h.

template<class TInputImage , class TOutputImage = Image<double,3>>

itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::ScalarMapFromSPFImageFilter ( const Self & )

private

Member Function Documentation

template<class TInputImage , class TOutputImage >

void itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData ( )

protected

Definition at line 54 of file itkScalarMapFromSPFImageFilter.hxx.

References utl::Factorial(), utl::GammaHalfInteger(), utl::IsEven(), utl::Lagurre(), M_PI, utl::sign(), and itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::ThreadedGenerateData().

Referenced by itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::InternalClone().

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template<class TInputImage , class TOutputImage = Image<double,3>>

virtual::itk::LightObject::Pointer itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::CreateAnother ( void ) const

template<class TInputImage , class TOutputImage >

void itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::GenerateOutputInformation ( void )

protected

Definition at line 26 of file itkScalarMapFromSPFImageFilter.hxx.

References itk::CopyImageInformation(), and itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::InternalClone().

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template<class TInputImage , class TOutputImage = Image<double,3>>

virtual MapType itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::GetMapType ( )

virtual

template<class TInputImage , class TOutputImage = Image<double,3>>

virtual const char* itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

LightObject::Pointer itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::InternalClone ( ) const

protected

Definition at line 37 of file itkScalarMapFromSPFImageFilter.hxx.

References itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::BeforeThreadedGenerateData().

Referenced by itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::GenerateOutputInformation().

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template<class TInputImage , class TOutputImage = Image<double,3>>

itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::itkTypedefMaskedImageToImageMacro ( Superclass )

template<class TInputImage , class TOutputImage = Image<double,3>>

static Pointer itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::New ( )

static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage = Image<double,3>>

void itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::operator= ( const Self & )

private

template<class TInputImage , class TOutputImage >

void itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

protectedvirtual

Reimplemented from itk::FeaturesFromSPFImageFilter< TInputImage, TOutputImage >.

Definition at line 178 of file itkScalarMapFromSPFImageFilter.hxx.

References utl::PrintUtlVector().

Referenced by itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::ThreadedGenerateData().

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template<class TInputImage , class TOutputImage = Image<double,3>>

virtual void itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::SetMapType ( MapType _arg )

virtual

template<class TInputImage , class TOutputImage >

void itk::ScalarMapFromSPFImageFilter< TInputImage, TOutputImage >::ThreadedGenerateData	(	const typename TOutputImage::RegionType &	outputRegionForThread,
		ThreadIdType	threadId
	)