USAGE:
MeshFromPeaks [--returnparameterfile <std::string>]
[--processinformationaddress <std::string>] [--xml]
[--echo] [--debug] [-p] [--st] [--nolighting]
[--nonormal] [--zoom <double>] [--png <std::string>]
[--bg <std::vector<double>>] [--angle
<std::vector<double>>] [--size <std::vector<int>>]
[--scale <double>] [--slice <std::vector<int>>] [--box
<std::vector<int>>] [--flip <std::vector<int>>] [--color
<std::vector<int>>] [--maxnumber <int>] [--radius
<double>] [--colorscheme <DIRECTION|FIXED>] [--type <XYZV
|XYZ|NXYZV|NXYZ>] [-o <std::string>] [--] [--version]
[-h] <std::string>
Where:
--returnparameterfile <std::string>
Filename in which to write simple return parameters (int, float,
int-vector, etc.) as opposed to bulk return parameters (image,
geometry, transform, measurement, table).
--processinformationaddress <std::string>
Address of a structure to store process information (progress, abort,
etc.). (value: 0)
--xml
Produce xml description of command line arguments (value: 0)
--echo
Echo the command line arguments (value: 0)
--debug
debug (value: 0)
-p, --progress
show progress of processing (value: 0)
--st
Use single thread. (value: 0)
--nolighting
Set LightingOff. (value: 0)
--nonormal
Do not use vtkPolyDataNormals. (value: 0)
--zoom <double>
zoom factor. Used when visualzing the vtk file.
--png <std::string>
output png file. Used when visualzing the vtk file.
--bg <std::vector<double>>
background color for the window (value: 0,0,0)
--angle <std::vector<double>>
azimuth,elevation. Used when visualzing the vtk file. (value: 0.0,0.0)
--size <std::vector<int>>
window size. Used when visualzing the vtk file. (value: 600,600)
--scale <double>
Scale factor: length of the peaks. (value: 1)
--slice <std::vector<int>>
coordinates for coronal, sagittal and transverse views. When -1 is
used for x/y/z, then the voxel is visible in the x/y/z-axis. (value:
-1,-1,-1)
--box <std::vector<int>>
only generate mesh from a given box (x0,x1,y0,y1,z0,z1). When -1 is
used, then x0/y0/z0 will be 0, x1/y1/z1 will be the maximal number in
the x/y/z-axis. (value: -1,-1,-1,-1,-1,-1)
--flip <std::vector<int>>
Flip x/y/z-axis for spherical functions. 1 means flip, 0 means
no-flip. (value: 0,0,0)
--color <std::vector<int>>
Use fixed color for peaks when --colorscheme FIXED is set. (value: 255
,255,0)
--maxnumber <int>
If it is positive, the given maximum number of peaks are used for
visualization (first several peaks). Otherwise, visualize all peaks.
(value: -1)
--radius <double>
Tube radius. If it is negative or zero, use lines instead of tubes.
(value: 0.02)
--colorscheme <DIRECTION|FIXED>
Color scheme. DIRECTION: r,g,b determined by direction. FIXED: fixed
color in --color. (value: FIXED)
--type <XYZV|XYZ|NXYZV|NXYZ>
Peak Type. XYZV: peak direction vector (x,y,z) + peak magnitude v;
XYZ: peak direction vector; NXYZV: number of peaks + peak direction
vectors + peak magnitudes; NXYZ: number of peaks + peak direction
vectors. (value: XYZV)
-o <std::string>, --output <std::string>
Output vtk file. If it is not set, visualize the vtk file. (value: "")
--, --ignore_rest
Ignores the rest of the labeled arguments following this flag.
--version
Displays version information and exits.
-h, --help
Displays usage information and exits.
<std::string>
(required) Input file.
Description: Create a mesh from peaks for visualization.
Examples:
MeshFromPeaks eap_r0.015_peaks.nii.gz -o eap_r0.015_peaks_vis.vtk
--scale 1.0 --color 255,255,0 --radius 0.05
MeshFromPeaks eap_r0.015_peaks.nii.gz --scale 1.0 --color 255,255,0
--radius 0.05
MeshFromPeaks eap_r0.015_peaks.nii.gz -o eap_r0.015_peaks_vis.vtk
--scale 1.0 --color 255,255,0 --radius -1.0
Author(s): Jian Cheng (jian.cheng.1983@gmail.com)
Acknowledgements: Thank you everyone.
